Dockerfile to run the pre processing steps for DexSeq
- Ubuntu 14.04
- Python 2.7
- HTSeq-0.12.4
Note this would NOT be used to run the DEXSeq R module itself. Use a separate R/Bioconductor/DEXSeq container for that step.
Example commands for this docker container: python /usr/local/DEXSeq/dexseq_prepare_annotation.py python /usr/local/DEXSeq/dexseq_count.py htseq-count -h