malachig
Associate Professor, Department of Medicine and McDonnell Genome Institute @ Washington University. Specializing in Bioinformatics, Genomics, and Cancer.
Washington UniversitySt. Louis
Pinned Repositories
dgidb
Rails frontend to The Genome Institute's drug gene interaction database.
civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
civic-server
Backend Server for CIViC Project
GenVisR
Genome data visualizations
regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
AGFusion
Python package to annotate and visualize gene fusions.
alexa
source code for ALEXA arrays project
archive
Archive of old code that needed tracking (for now)
immuno_gcp_wdl_rcrf
Running the WASHU Immunogenomics Workflow on Google Cloud - RCRF version
malachig's Repositories
malachig/archive
Archive of old code that needed tracking (for now)
malachig/immuno_gcp_wdl_rcrf
Running the WASHU Immunogenomics Workflow on Google Cloud - RCRF version
malachig/AGFusion
Python package to annotate and visualize gene fusions.
malachig/alexa
source code for ALEXA arrays project
malachig/alexa-seq
ALEXA-seq - alternative expression analysis by RNA-seq
malachig/analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
malachig/analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
malachig/civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
malachig/civic-docs
Source code for the civicdb.org docs
malachig/civic-server
Backend Server for CIViC Project
malachig/cwl-scripts
misc scripts for working with cwl/toil jobs
malachig/DEXSeq
Dockerfile to use DEXSeq in the cluster
malachig/dgi-db
Rails frontend to The Genome Institute's drug gene interaction database.
malachig/docker-pvactools
malachig/genome
malachig/griffithlab.org
Griffith lab research website
malachig/malachigriffith.org
malachigriffith.org
malachig/OTTR_Template
OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version.
malachig/pVACtools
malachig/pVACtools_Intro_Course
Getting started with pVACtools - pVACseq, pVACbind and pVACview
malachig/PythonDexSeq
Dockerfile with Python to make the pre processing steps for DexSeq
malachig/regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.