R data objects used for tutorials
genes: UCSC refflat genes from hg38: http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/refFlat.txt.gz
sites: HIV integration site data processed from PMID: 24489369 & 21561906
R script used for report making tutorial
markdown_custom.R: template R script to demonstrate usage of markdown_custom.css markdown_custom.Rmd: template markdown document markdown_custom.css: gutted bootstrap css with table of content mod for markdown reports "markdown_custom.md.html: product of running markdown_custom.R
hiReadsProcessor_object.png: structural hierarchy of sampleInfo object from hiReadsProcessor R package