Pinned Repositories
alleleFrequencyApp
Allele frequency filter app
CircosIdeogram
Make Circos style Ideogram plot of point genomic data with few features.
data_share
Scratch repo for sharing data and examples
GATK4_Best_Practice
GATK4 Best Practice Nextflow Pipeline
hiAnalyzer
Functions for analyzing and visualizing viral integration site data.
hiAnnotator
Functions for annotating GRanges objects
hiReadsProcessor
Process LM-PCR product libraries
intSiteCaller
markdown-examples
Markdown examples for for SUAR IT training
Slim-Extras
Additional resources for the Slim Framework for PHP 5
malnirav's Repositories
malnirav/hiAnnotator
Functions for annotating GRanges objects
malnirav/hiReadsProcessor
Process LM-PCR product libraries
malnirav/CircosIdeogram
Make Circos style Ideogram plot of point genomic data with few features.
malnirav/Slim-Extras
Additional resources for the Slim Framework for PHP 5
malnirav/alleleFrequencyApp
Allele frequency filter app
malnirav/data_share
Scratch repo for sharing data and examples
malnirav/GATK4_Best_Practice
GATK4 Best Practice Nextflow Pipeline
malnirav/hiAnalyzer
Functions for analyzing and visualizing viral integration site data.
malnirav/intSiteCaller
malnirav/markdown-examples
Markdown examples for for SUAR IT training
malnirav/RdataObjects
Misc R data objects to be used for tutorials
malnirav/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
malnirav/slidify
Generate reproducible html5 slides from R markdown