malnirav

malnirav's Stars

• Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine

  Genomic Interactive Visualization Engine

  Language:JavaScript14331

• Genomon-Project/paplot

  paplot creates various dynamic and interactive reports for cancer genome analysis.

  Language:JavaScript256

• Topwood91/FSVA

  Language:C++52

• databio/simpleCache

  Simplified R caching for reproducible big data projects

  Language:R346

• tommyau/indelseek

  Detect complex indels from next-generation sequencing reads

  Language:Perl112

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++404154

• walaj/SeqLib

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  Language:C++13236

• sherrillmix/dnaplotr

  Plot a collection of aligned sequences

  Language:R5

• sherrillmix/vipor

  Plot one-dimensional data using quasirandom noise and density estimates

  Language:R262

• Illumina/strelka

  Strelka2 germline and somatic small variant caller

  Language:C++356103

• fulcrumgenomics/fgbio

  Tools for working with genomic and high throughput sequencing data.

  Language:Scala31267

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python482190

• aquaskyline/16GT

  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

  Language:Perl278

• const-ae/tidygenomics

  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

  Language:R1025

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.2k627

• kahun/awesome-sysadmin

  A curated list of amazingly awesome open source sysadmin resources inspired by Awesome PHP.

  23.7k2.9k

• wsargent/docker-cheat-sheet

  Docker Cheat Sheet

  22.1k4.6k

• rocker-org/rocker

  R configurations for Docker

  Language:Shell1.5k273

• rocker-org/rstudio-daily

  Daily builds of pre-release RStudio, built on daily builds of pre-release R. Live on the bleeding edge.

  Language:Shell86

• Ettwiller/Damage-estimator

  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).

  Language:Perl5115

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl372216

• BioContainers/containers

  Bioinformatics containers

  Language:Dockerfile677248

• comsysto/ShinyMongo

  ShinyMongo - an R based mongoDB User Interface

  Language:R1511

• garber-lab/ESAT

  Stripped-down version of original ESAT code

  Language:Java65

• cran/RAPIDR

  :exclamation: This is a read-only mirror of the CRAN R package repository. RAPIDR — Reliable Accurate Prenatal non-Invasive Diagnosis R package

  Language:R23

• hammerlab/pileup.js

  Interactive in-browser track viewer

  Language:JavaScript27463

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k620

• genome-in-a-bottle/giab_latest_release

  This repository contains information about latest release from Genome in a Bottle project

  735

• genome-in-a-bottle/giab_FAQ

  This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project

  101

• malnirav/hiAnnotator

  Functions for annotating GRanges objects

  Language:R43