FileNotFoundError: [Errno 2] No such file or directory:

[zhuangfjnu]

Hi,
I ran into the following error:

ragoo.py outpre.ctg.lay.fa merge.ccs.fasta
Mon Jan 27 17:33:56 2020 --- Reading alignments
Mon Jan 27 17:37:10 2020 --- Assigning contigs
Traceback (most recent call last):
File "/home/nfhy_huangz/miniconda2/envs/ragoo/bin/ragoo.py", line 4, in
import('pkg_resources').run_script('RaGOO==1.1', 'ragoo.py')
File "/home/nfhy_huangz/miniconda2/envs/ragoo/lib/python3.8/site-packages/pkg_resources/init.py", line 667, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/nfhy_huangz/miniconda2/envs/ragoo/lib/python3.8/site-packages/pkg_resources/init.py", line 1470, in run_script
exec(script_code, namespace, namespace)
File "/home/nfhy_huangz/miniconda2/envs/ragoo/lib/python3.8/site-packages/RaGOO-1.1-py3.8.egg/EGG-INFO/scripts/ragoo.py", line 744, in
File "/home/nfhy_huangz/miniconda2/envs/ragoo/lib/python3.8/site-packages/RaGOO-1.1-py3.8.egg/EGG-INFO/scripts/ragoo.py", line 123, in write_contig_clusters
FileNotFoundError: [Errno 2] No such file or directory: 'm64031_200102_132349/172032446/ccs_contigs.txt'

What possible could have caused the error?

Thanks,
Zhen

[malonge]

Hi there,

Could you show me what is in your groupings directory?

Also, could you show me some example fasta headers from merge.ccs.fasta?

Thanks

[zhuangfjnu]

Hi MIchael,
There is no file in the groupings directory.
the headers of merge.ccs.fasta are

m64031_200102_132349/178718244/ccs
m64031_200102_132349/178718248/ccs
m64031_200102_132349/178718250/ccs

Thanks

[zhuangfjnu]

Hi MIchael,
I put the wrong files (merge.ccs.fasta )as the reference file.
Sorry about this issue.

Zhen