Pinned Repositories
AlignmentConverters
Convert between common sequence alignment formats
CallSV
A long-read SV calling pipeline
ChromMatch
Assign chromosome names to a genome assembly
PatchPolish
RaGOO
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
rpi
Raspberry Pi Projects
seqtk
Toolkit for processing sequences in FASTA/Q formats
PodPlot
Plot coverage or percent of total sequence as a function of minimum read length
malonge's Repositories
malonge/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
malonge/RaGOO
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
malonge/CallSV
A long-read SV calling pipeline
malonge/AlignmentConverters
Convert between common sequence alignment formats
malonge/PatchPolish
malonge/ChromMatch
Assign chromosome names to a genome assembly
malonge/DupCheck
Genotype putative DUPs by querying short read coverage
malonge/old_malonge.github.io
malonge/seqtk
Toolkit for processing sequences in FASTA/Q formats
malonge/T2T-Polish
Repository for the T2T CHM13 team-polishing group
malonge/rpi
Raspberry Pi Projects
malonge/Assemblytics_web
Full web application code for Assemblytics
malonge/bioconda-recipes
Conda recipes for the bioconda channel.
malonge/CallIntrogressions
malonge/CAMSA
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
malonge/FALCON
FALCON: experimental PacBio diploid assembler
malonge/hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
malonge/malonge.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
malonge/Minipolish
A tool for Racon polishing of miniasm assemblies
malonge/NanoGrid
Nanopolish wrapper for SGE
malonge/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data