malonge

malonge's Stars

• d3/d3

  Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

  Language:Shell109k3.6k2.2k22.9k

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python72.6k9031.2k6.4k

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python60.6k2.1k11.3k25.5k

• GoogleCloudPlatform/microservices-demo

  Sample cloud-first application with 10 microservices showcasing Kubernetes, Istio, and gRPC.

  Language:Go17.2k2353957.5k

• statsmodels/statsmodels

  Statsmodels: statistical modeling and econometrics in Python

  Language:Python10.3k2875.5k3.2k

• hail-is/hail

  Cloud-native genomic dataframes and batch computing

  Language:Python984552.4k247

• WhyNotHugo/python-barcode

  ㊙️ Create standard barcodes with Python. No external dependencies. 100% Organic Python.

  Language:Python5828120124

• mummer4/mummer

  Mummer alignment tool

  Language:C++47621203108

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C34086218

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2526228

• kishwarshafin/pepper

  PEPPER-Margin-DeepVariant

  Language:Python2441019742

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python23594323

• smarco/WFA-paper

  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

  Language:C200142716

• napoles-uach/stmol

  This is the repository for the Stmol project, a Streamlit component that uses py3Dmol to render molecules.

  Language:Python19651736

• huangnengCSU/compleasm

  A genome completeness evaluation tool based on miniprot

  Language:Python18653818

• waveygang/wfmash

  base-accurate DNA sequence alignments using WFA and mashmap3

  Language:C++17996720

• open2c/bioframe

  Genomic interval operations on Pandas DataFrames

  Language:Python1761210930

• lh3/pangene

  Constructing a pangenome gene graph

  Language:C1757189

• smarco/WFA2-lib

  WFA-lib: Wavefront alignment algorithm library v2

  Language:C162156038

• refresh-bio/agc

  Assembled Genomes Compressor

  Language:C++16071713

• googlegenomics/gcp-variant-transforms

  GCP Variant Transforms

  Language:Python1381823955

• marbl/ModDotPlot

  Language:Python124122110

• varlociraptor/varlociraptor

  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

  Language:Rust12276916

• AntonBankevich/LJA

  Language:C++110113816

• NIGMS/NIGMS-Sandbox

  Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

  Language:Shell561413

• lh3/miniwfa

  A reimplementation of the WaveFront Alignment algorithm at low memory

  Language:C49544

• smarco/BiWFA-paper

  Bidirectional WFA (Paper)

  Language:C418103

• maclandrol/FisherExact

  Fisher exact test for mxn contingency table in python

  Language:Fortran3851512

• cropsinsilico/yggdrasil

  A framework for connecting scientific models across languages and scales.

  Language:Python3354423

• rebeccaserramari/polyploid-potato-assembly

  Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data"

  Language:Python14321