malonge's Stars
d3/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
3b1b/manim
Animation engine for explanatory math videos
scikit-learn/scikit-learn
scikit-learn: machine learning in Python
GoogleCloudPlatform/microservices-demo
Sample cloud-first application with 10 microservices showcasing Kubernetes, Istio, and gRPC.
statsmodels/statsmodels
Statsmodels: statistical modeling and econometrics in Python
WhyNotHugo/python-barcode
㊙️ Create standard barcodes with Python. No external dependencies. 100% Organic Python.
mummer4/mummer
Mummer alignment tool
nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
lh3/miniprot
Align proteins to genomes with splicing and frameshift
amplab/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
marbl/verkko
schneebergerlab/plotsr
Tool to plot synteny and structural rearrangements between genomes
tjiangHIT/cuteSV
Long read based human genomic structural variation detection with cuteSV
kishwarshafin/pepper
PEPPER-Margin-DeepVariant
smarco/WFA-paper
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
napoles-uach/stmol
This is the repository for the Stmol project, a Streamlit component that uses py3Dmol to render molecules.
shenwei356/kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
waveygang/wfmash
base-accurate DNA sequence alignments using WFA and mashmap2
open2c/bioframe
Genomic interval operations on Pandas DataFrames
huangnengCSU/compleasm
A genome completeness evaluation tool based on miniprot
smarco/WFA2-lib
WFA-lib: Wavefront alignment algorithm library v2
eldariont/svim
Structural Variant Identification Method using Long Reads
refresh-bio/agc
Assembled Genomes Compressor
AntonBankevich/LJA
marbl/ModDotPlot
lh3/miniwfa
A reimplementation of the WaveFront Alignment algorithm at low memory
smarco/BiWFA-paper
Bidirectional WFA (Paper)
maclandrol/FisherExact
Fisher exact test for mxn contingency table in python
cropsinsilico/yggdrasil
A framework for connecting scientific models across languages and scales.
dfguan/pin_hic
A Hi-C scaffolding method