/PodPlot

Plot coverage or percent of total sequence as a function of minimum read length

Primary LanguagePython

PodPlot

Dependencies

  • Python3
  • Matplotlib

Usage

  1. Make a fasta/fastq index with samtools.
  2. List the index files:
$ cat fai.fofn
reads.1.fasta.fai	Shadowfax
reads.2.fasta.fai	Snowmane	
reads.3.fasta.fai	Bill
  1. python3 podplot.py fai.fofn or python3 podplot.py -g 1500000000 fai.fofn