schatzlab

Pinned Repositories

appliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
Language:HTML56 14 014
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
Language:Jupyter Notebook77 12 030
appliedgenomics2019
Materials for Spring 2019 Applied Genomics Course
21 10 08
appliedgenomics2021
Materials for Spring 2021 Applied Genomics Course
52 8 09
appliedgenomics2022
Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
Language:Jupyter Notebook23 8 09
appliedgenomics2023
Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
Language:HTML27 8 05
crossstitch
Code for phasing SVs with SNPs
Language:Java52 8 153
genomescope
Fast genome analysis from unassembled short reads
Language:JavaScript271 20 14356
pseudohaploid
Create a pseudohaploid assembly from a partially resolved diploid assembly
Language:Perl32 6 75
t2t-variants
Language:Papyrus21 4 36

schatzlab's Repositories

schatzlab/genomescope
Fast genome analysis from unassembled short reads
Language:JavaScript271 20 14356
schatzlab/appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
Language:Jupyter Notebook77 12 030
schatzlab/appliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
Language:HTML56 14 014
schatzlab/appliedgenomics2021
Materials for Spring 2021 Applied Genomics Course
52 8 09
schatzlab/crossstitch
Code for phasing SVs with SNPs
Language:Java52 8 153
schatzlab/pseudohaploid
Create a pseudohaploid assembly from a partially resolved diploid assembly
Language:Perl32 6 75
schatzlab/appliedgenomics2023
Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
Language:HTML27 8 05
schatzlab/appliedgenomics2022
Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
Language:Jupyter Notebook23 8 09
schatzlab/appliedgenomics2019
Materials for Spring 2019 Applied Genomics Course
21 10 08
schatzlab/t2t-variants
Language:Papyrus21 4 36
schatzlab/scikit-ribo
Accurate estimation and robust modelling of translation dynamics at codon resolution
Language:Python19 9 88
schatzlab/datastructures2018
Materials for JHU Data Structures 2018
Language:Java17 19 013
schatzlab/appliedgenomics2020
Description Materials for Spring 2020 Applied Genomics Course
Language:Jupyter Notebook16 6 04
schatzlab/biomedicalresearch2021
Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
13 3 03
schatzlab/Col-CEN
Resources for the Col-CEN reference genome assemblies
11 6 113
schatzlab/t2t-chm13-chry
Language:Jupyter Notebook9 3 10
schatzlab/PodPlot
Plot coverage or percent of total sequence as a function of minimum read length
Language:Python6 4 23
schatzlab/biomedicalresearch2017
EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
Language:Jupyter Notebook3 3 03
schatzlab/appliedgenomics2024
Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
Language:Jupyter Notebook23
schatzlab/LongTron
Language:Shell2 4 02
schatzlab/schatzlab.github.io
Source materials for schatzlab.github.io
Language:HTML2 23 02
schatzlab/anvil
1 3 0
schatzlab/scikit-ribo_manuscript
Reproducing the analysis in the scikit-ribo manuscript using iPython notebooks
Language:Jupyter Notebook1 3 02
schatzlab/biomedicalresearch2019
Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
Language:Python1
schatzlab/coursetest
testing course management
schatzlab/GECCO
Genomic Enrichment Computational Clustering Operation
Language:Python
schatzlab/iGenomics-data
Test data for iGenomics
2 1
schatzlab/long-read-commentary
Language:R3 0
schatzlab/Nchart
Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file
Language:R3 01
schatzlab/wdl101-2023
wdl101 2023 edition