mamun41

ActiveTransferLearning

Code for various active transfer learning projects.

ADTransitions

Estimating transition probabilities in a multi-state model for Alzheimer's Disease (AD)

Alcoholic-hepatitis-ML

ASD-Integration-Subtypes-Manuscript

Awesome-VAEs

A curated list of awesome work on VAEs, disentanglement, representation learning, and generative models.

bio-cca

Code accompanying the paper "A biologically plausible neural network for multi-channel Canonical Correlation Analysis"

brca_proteome-data

cancersea

a simple R data package for curated cancer pathway-specific gene lists

CancerTypePrediction-1D-CNN

This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".

MOMLIN_softwar

Multimodal and Omics Machine learning integration for drug response biomarker discovery

mamun41/MOMLIN_softwar

Multimodal and Omics Machine learning integration for drug response biomarker discovery

mamun41/Comparative_analysis_multi-omics_biomarker

mamun41/dbPepVar_related-to-server

mamun41/functional_control_m

Repository of the code used for the paper "Functional Control of Oscillator Networks"

mamun41/GCN_multiomics_4new_work

mamun41/GraphCON_vis_coupled_oscillator

GraphCON (ICML 2022)

mamun41/Hyeon_et_al_PDAC_Nature_Cance_proteogenomicsr

mamun41/ImmuCellAI

ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data

mamun41/IOBR

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

mamun41/kuramoto

Python implementation of the Kuramoto model

mamun41/Kuramoto_Oscillators_basic

The Complex network of Coupled Oscillators can be replicate by Coupled Oscillators. Kuramoto Oscillators Model represent the Non-Linearly Coupled Oscillators which goes in Phase Transition from Asynchrony to Synchronization.

mamun41/KuramotoSakaguchiModel_m

Kuramoto - Sakaguchi Model Applet

mamun41/lecture_dtw_notebook_

mamun41/Luminal-B-study

mamun41/MOBILE_m

Multi-Omics Binary Integration via Lasso Ensembles (MOBILE)

mamun41/modelling_cca_brca_survival

Code to accompany journal submission "Modelling-based joint embedding of histology and genomics using canonical correlation analysis for breast cancer survival prediction"

mamun41/module-6-Integrative-Bioinformatics

Integrative bioinformatics course of the Diplôme Universitaire en Bioinformatique Integrative (DU-Bii)

mamun41/MOVE_vs_M2SCCA

MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

mamun41/Mowgli

Single-cell multi-omics integration using Optimal Transport

mamun41/MTS2CCA

mamun41/Multi-omics_biomarker

Multi-omics biomarker discovery tool exploiting a gene-gene interaction network

mamun41/multiomics_BRCA_therapy_response

mamun41/paccmann_generator

Generative models for transcriptomic-driven or protein-driven molecular design (PaccMann^RL).

mamun41/pasmopy

Patient-Specific Modeling in Python

mamun41/scanoncorr

Sparse canonical correlation analysis

mamun41/scCTClust_DCCA-torch

A torch implement of CITE-seq clustering method scCTClust

mamun41/sciPath_pathway-based-clustering

Improving Single-Cell RNA-seq Clustering by Integrating Pathways

mamun41/SMCCA-GS_SSMCCA_2new

Sparse Multiple Canonical Correlation Analysis

mamun41/TNBC_analysis1

Code to reproduce TNBC analysis and figures

mamun41/Two_State_Oscillators

Model system with two states exhibiting a change in coherence of oscillations upon state transitions.