manerotoni
Microscopist and image analyst at the facility for light microscopy of the MPINAT, Goettingen
Max Planck Institute for Multidisciplinary SciencesGoettingen
Pinned Repositories
dl-for-micro
Course and exercises on deep learning for microscopy image analysis
afw
afw_testdata
augmend
simple package for augmentation of n-dimensional arrays
AutomatedMicroscopy
cecog
A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
CellProfiler
CellProfiler is open-source cellular image analysis software.
ConfocalGN
Generates simulated confocal data from a ground truth signal
mypic
training-resources
Resources for teaching/preparing to teach bioimage analysis
manerotoni's Repositories
manerotoni/mypic
manerotoni/ConfocalGN
Generates simulated confocal data from a ground truth signal
manerotoni/afw
manerotoni/afw_testdata
manerotoni/augmend
simple package for augmentation of n-dimensional arrays
manerotoni/AutomatedMicroscopy
manerotoni/cecog
A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
manerotoni/CellProfiler
CellProfiler is open-source cellular image analysis software.
manerotoni/ch.psi.imagej.hdf5
ImageJ HDF5 Plugin
manerotoni/CommMicroscope
Fiji code to read-write registry and run macro on new files of directory
manerotoni/cytosim
Cytosim is a cytoskeleton simulation engine
manerotoni/DotLinker
linking segmented dots
manerotoni/emblDL2022
manerotoni/fcsfiles
Read fluorescence correlation spectroscopy (FCS) data files. Forked from https://pypi.org/project/fcsfiles
manerotoni/fiji-plugin-cats
manerotoni/GLCM2
calculates GLCM, to make it friendly for scripting.
manerotoni/list-of-update-sites
The update sites ImageJ knows about automatically
manerotoni/MicroscopeRemoteControl
About Microscope Remote Control is an application to control a microscope remotely via network
manerotoni/minflux-analysis
Some tools to work with Minflux microscopy data
manerotoni/npc_assembly_Otsuka_2022
Code associated to the publication "A quantitative map of nuclear pore assembly reveals two distinct mechanisms" Otsuka et al. 2022, Nature.
manerotoni/stardist
StarDist - Object Detection with Star-convex Shapes
manerotoni/teaching-dl-course-2022
Materials for the EMBL Deep Learning course
manerotoni/training-resources
Resources for teaching/preparing to teach bioimage analysis
manerotoni/tutorials
ImageJ programming examples
manerotoni/visiview-scripts
A collection of macros for the VisiView acquisition software