NEUBIAS/training-resources

Issues

• Activity: Open OME-TIFF in python

  #731 opened a month ago by tischi
  0

• Inspect OME-TIFF metadata

  #730 opened a month ago by tischi
  0

• Activity: Save numpy array as OME-TIFF

  #729 opened a month ago by tischi
  0

• Python activity to create OME-Zarr from a numpy array

  #723 opened 2 months ago by tischi
  0

• Image data formats: refactor into one activity per format

  #720 opened 2 months ago by tischi
  27

• Activity for viewing OME-Zarr in Java ecosystem

  #724 opened 2 months ago by tischi
  1

• Add BigVolumeViewer to 3D rendering module

  #726 opened 2 months ago by tischi
  0

• For loops: Simplify?

  #716 opened 2 months ago by tischi
  10

• Improve OME-Zarr module

  #721 opened 2 months ago by tischi
  0

• Viewing OME-Zarr in python ecosystem

  #725 opened 2 months ago by tischi
  0

• Read chunked and multi-resolution OME-TIFF

  #722 opened 2 months ago by tischi
  0

• Image data formats: Saving in various formats

  #719 opened 2 months ago by tischi
  3

• Add AKA to modules

  #718 opened 3 months ago by tischi
  1

• Add VSI file to image_data

  #717 opened 3 months ago by tischi
  0

• URL with ? does only works for multiactivities

  #715 opened 3 months ago by tischi
  0

• Remove OME-TIFF saving from first Image File Formats activity

  #710 opened 3 months ago by tischi
  4

• Module batch processing: Loading results with MoBIE table fails

  #711 opened 3 months ago by jhennies
  6

• directly link activities for a specific implementation

  #709 opened 3 months ago by tischi
  6

• Remove template courses

  #708 opened 3 months ago by tischi
  3

• Jupyter notebook to teach on how to handle different file formats with python

  #705 opened 4 months ago by felixS27
  8

• How to deal with python file paths

  #704 opened 4 months ago by tischi
  1

• Connected components: skimage 2 connected may be only 26-8 connected...

  #703 opened 4 months ago by tischi
  0

• Simplify / change shape measurements activities

  #669 opened 6 months ago by tischi
  2

• object measurement introduce eccentricity in explanation, python circularity calculation

  #690 opened 5 months ago by manerotoni
  2

• Shape measurements: remove 3-D image from napari skimage activity

  #667 opened 4 months ago by tischi
  0

• Add 3-D shape measurement activity

  #702 opened 4 months ago by tischi
  0

• Shape measurements, add aspect ratio description

  #666 opened 6 months ago by tischi
  2

• Volume rendering, volume slicing, spatial calibration

  #696 opened 4 months ago by tischi
  1

• Digital image basics: Napari, add cropped image to viewer

  #700 opened 4 months ago by tischi
  1

• Module calibration: Napari scale bar?

  #699 opened 4 months ago by tischi
  1

• Add file conversion activity to batch analysis module

  #698 opened 4 months ago by tischi
  0

• Image registration

  #697 opened 4 months ago by tischi
  0

• Minimal CZI or ND2 or LIF example data needed

  #692 opened 5 months ago by tischi
  2

• TIFF module

  #691 opened 5 months ago by tischi
  1

• open of images use a generic library

  #689 opened 5 months ago by manerotoni
  3

• Collage images in LUT are not tiff standard format

  #688 opened 5 months ago by manerotoni
  0

• Implement python activities for "Working with Strings"

  #683 opened 6 months ago by tischi
  0

• add example of computing an otsu threshold of each label in the intensity measurements module

  #685 opened 6 months ago by tischi
  0

• How to save images in python?

  #671 opened 6 months ago by tischi
  2

• Improve for-loop module

  #684 opened 6 months ago by tischi
  0

• Improve Batch Processing Figure by adding Label Mask outputs

  #680 opened 6 months ago by tischi
  0

• Convert Working With Strings to use MultiActivities

  #682 opened 6 months ago by tischi
  0

• Convert batch processing module to use mult-activities

  #681 opened 6 months ago by tischi
  0

• Update the 202X_skimage_napari training material

  #670 opened 6 months ago by tischi
  0

• Morphological filters napari skimage activities

  #678 opened 6 months ago by tischi
  1

• Measure Object Intensity Module: Add using the "0" pixels in the label mask as an option to measure the background

  #679 opened 6 months ago by tischi
  0

• Remove function and second image call from the activity of "2D noisy object segmentation and filtering"

  #676 opened 6 months ago by maulakhan
  0

• Main figure of module "Morphological filters"

  #672 opened 6 months ago by maulakhan
  2

• Remove the list comprehension stuff from the shape measurements...

  #668 opened 6 months ago by tischi
  2

• Remove the "name=" from viewer.add_image and viewer.add_label

  #665 opened 6 months ago by tischi
  0