Pinned Repositories
apptainer
Apptainer: Application containers for Linux
TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequences
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
RepeatMasker_Nextflow
Nextflow script for running RepeatMasker on a cluster
MCHelper
MCHelper: An automatic tool to curate transposable element libraries
git_PhD
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
TEtrimmer
TEtrimmer: a novel tool to automate manual curation of transposable elements
figtree
Automatically exported from code.google.com/p/figtree
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
manighanipoor's Repositories
manighanipoor/git_PhD
manighanipoor/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations