maragkakislab
Tools developed by the Maragkakis lab. These tools are made available here without any guarantee of support
Baltimore, MD
Pinned Repositories
bioutils
Standalone utility scripts for bioinformatics
Hackathon202305
Our first hackathon! Training for mRNA decay rates
mouse_liver
Collaboration with Payel Sen
nanoplen
Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.
rnakinet
RNAkinet: Detect 5eu-modified reads directly from the raw nanopore sequencing signal to quantify RNA kinetics
rnakinet-pub
samql
SQL-like query language for the SAM/BAM file format
samutils
Standalone utility scripts for manipulating SAM files
senescence-omics
Source code for manuscript "Senescence-specific translation dysregulation desensitizes cells to stress by inhibiting activation of the integrated stress response"
tabletools
Miscellaneous scripts for manipulating table files
maragkakislab's Repositories
maragkakislab/samql
SQL-like query language for the SAM/BAM file format
maragkakislab/bioutils
Standalone utility scripts for bioinformatics
maragkakislab/rnakinet
RNAkinet: Detect 5eu-modified reads directly from the raw nanopore sequencing signal to quantify RNA kinetics
maragkakislab/rnakinet-pub
maragkakislab/Hackathon202305
Our first hackathon! Training for mRNA decay rates
maragkakislab/mouse_liver
Collaboration with Payel Sen
maragkakislab/nanoplen
Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.
maragkakislab/samutils
Standalone utility scripts for manipulating SAM files
maragkakislab/senescence-omics
Source code for manuscript "Senescence-specific translation dysregulation desensitizes cells to stress by inhibiting activation of the integrated stress response"
maragkakislab/tabletools
Miscellaneous scripts for manipulating table files