Our first hackathon!
Monday May 22 is the Neural Network workshop
Tuesday May 23 is the Hackathon
10am to when our food runs out.
For each gene, we want to be able to predict its decay rate, i.e. half-life or equivalent measures, using properties of genes.
We have half-life measurements from the following sources:
- mmu 3T3 cells from Eisen et al https://doi.org/10.1016/j.molcel.2019.12.005
- mmu ESC from Sharova et al https://doi.org/10.1093/dnares/dsn030
- hsa HeLa from Tani et al https://genome.cshlp.org/content/22/5/947.full
- hsa various from Tani's Supplementary Tables
- Exonic lengths (UTR5 - CDS - UTR3)
- GC content (need to get)
- mmu 3T3: two samples (one MION, one PION)
- hsa HeLa
To obtain:
- Expression data
- Slide parameters: Proportion of full-length reads, max poly(A)-tail length
- Open drinks need to be two spill distances away from any computer