Pinned Repositories
AdventOfCode2021
Advent of Code 2021 solutions as part of my learning programming in C#. WARNING: some of the solutions are dirty.
BHGbuilder
Gets local minima list and tries to compute their saddles, landmap, and LM to LM energy barriers
BTCexchange
CNV_data
Data for training of CNV caller
CNV_population_study
Data and scripts for recreation of results for article in preparation: Understanding Genetic Variability: Exploring Copy Number Variants through Non-Invasive Prenatal Testing in European Populations
comparator
compare output files from RNAlocmin and barriers
GenomeScreen
Scripts and data needed to run GenomeScreen
MarCNV
React frontend for automated annotation of Copy Number Variants with ACMG criteria and machine learning
RNAlocmin
Finds local minima of RNA + constructs barrier tree
treekin
Numerically integrate a Markov process -- especially for predicting RNA folding kinetics
marcelTBI's Repositories
marcelTBI/CNV_data
Data for training of CNV caller
marcelTBI/GenomeScreen
Scripts and data needed to run GenomeScreen
marcelTBI/RNAlocmin
Finds local minima of RNA + constructs barrier tree
marcelTBI/treekin
Numerically integrate a Markov process -- especially for predicting RNA folding kinetics
marcelTBI/MarCNV
React frontend for automated annotation of Copy Number Variants with ACMG criteria and machine learning
marcelTBI/AdventOfCode2021
Advent of Code 2021 solutions as part of my learning programming in C#. WARNING: some of the solutions are dirty.
marcelTBI/BHGbuilder
Gets local minima list and tries to compute their saddles, landmap, and LM to LM energy barriers
marcelTBI/BTCexchange
marcelTBI/CNV_population_study
Data and scripts for recreation of results for article in preparation: Understanding Genetic Variability: Exploring Copy Number Variants through Non-Invasive Prenatal Testing in European Populations
marcelTBI/comparator
compare output files from RNAlocmin and barriers
marcelTBI/compHeights
comparator tool for energy heights from barriers and DSUeval
marcelTBI/forgi
An RNA manipulation library.
marcelTBI/gfold
Boltzman sampling of RNA secondary structures with support of pseudoknots of type genus 1 (1-structures).
marcelTBI/graphSim
Simulation and visualisation tool for RNA sequences
marcelTBI/RateGraph
Reduces the state space from BHGbuilder output file and create a rate matrix for treekin
marcelTBI/react-task-tracker
Simple Task tracker webpage in React as part of learning React
marcelTBI/RNAlandmap
Generates landmap(landmark) from RNAsubopt -e output
marcelTBI/TXODDS-task
Producer-consumer html crawler