Pinned Repositories
brainreg
Automated 3D brain registration with support for multiple species and atlases.
cellfie
CELL FIndEr segments neurons in calcium imaging data using convolutional neural networks.
cellfinder
Automated 3D cell detection and registration of whole-brain images
cellpose
a generalist algorithm for cellular segmentation
colorgram.py
A Python module for extracting colors from images. Get a palette of any picture!
dbscan
A simple implementation of DBSCAN in Python
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Hover_the_Brainbow
marieisaac's Repositories
marieisaac/brainreg
Automated 3D brain registration with support for multiple species and atlases.
marieisaac/cellfie
CELL FIndEr segments neurons in calcium imaging data using convolutional neural networks.
marieisaac/cellfinder
Automated 3D cell detection and registration of whole-brain images
marieisaac/cellpose
a generalist algorithm for cellular segmentation
marieisaac/colorgram.py
A Python module for extracting colors from images. Get a palette of any picture!
marieisaac/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
marieisaac/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
marieisaac/impractical_python
marieisaac/encode
Method for encoding brain connectomes in multidimensional arrays (tensors).
marieisaac/ephys_analysis
Processing and analysis of patch clamp electrophysiology data
marieisaac/FASTMAP
ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
marieisaac/FontaniniLab
marieisaac/igor
Read Igor Pro pxp files from python
marieisaac/Image-Processing-Algorithms
marieisaac/ipfx
computes intrinsic cell features from intracellular electrophysiology data
marieisaac/Learning-python
marieisaac/maffeilab.github.io
marieisaac/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
marieisaac/MetaNeighbor
A method to rapidly assess cell type identity using both functional and random gene sets
marieisaac/NIH-FAES-BIOF-399-Spring-2019
marieisaac/patchview
python toolkits and GUI for multi-patch whole-cell data analysis and visualization
marieisaac/python-ternary
:small_red_triangle: Ternary plotting library for python with matplotlib
marieisaac/SipperViz
A Python GUI for visualizing Sipper data
marieisaac/SpectraVis
An interactive web-based neuroscience app for analyzing task-related functional networks over time and frequency
marieisaac/tensorflow
Computation using data flow graphs for scalable machine learning
marieisaac/Test-segmentation
marieisaac/TetbowCodes
Codes and figure data used for "Bright multicolor labeling of neuronal circuits with fluorescent proteins and chemical tags" by Sakaguchi et al 2018
marieisaac/tracing_quantification_and_analysis
FIJI macros and python scripts to quantify and analyse RV and AAV tracings
marieisaac/wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
marieisaac/Zebrafish_spinal_cord_development