markme123

markme123's Stars

• dromara/x-file-storage

  一行代码将文件存储到 本地、FTP、SFTP、WebDAV、谷歌云存储、阿里云OSS、华为云OBS、七牛云Kodo、腾讯云COS、百度云 BOS、又拍云USS、MinIO、 AWS S3、FastDFS、 Azure Blob Storage、金山云 KS3、美团云 MSS、京东云 OSS、天翼云 OOS、移动云 EOS、沃云 OSS、 网易数帆 NOS、Ucloud US3、青云 QingStor、平安云 OBS、首云 OSS、IBM COS、其它兼容 S3 协议的平台。后续即将支持 Samba、NFS

  Language:Java1.6k258

• Visualize-ML/Book1_Python-For-Beginners

  Book_1_《编程不难》 | 鸢尾花书：从加减乘除到机器学习；请多多批评指正！

  Language:Jupyter Notebook4.5k862

• kopia/kopia

  Cross-platform backup tool for Windows, macOS & Linux with fast, incremental backups, client-side end-to-end encryption, compression and data deduplication. CLI and GUI included.

  Language:Go7.3k371

• libnano/primer3-py

  Simple oligo analysis and primer design

  Language:C15742

• c-zhou/yahs

  Yet another Hi-C scaffolding tool

  Language:C12118

• shimlab/BLAZE

  SingleCell Nanopore sequencing data analysis

  Language:Python466

• hillerlab/TOGA

  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

  Language:Python14823

• xiaochuanle/Falign

  An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)

  Language:C++8

• yulab2021/TandemMod

  Language:Jupyter Notebook122

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript810105

• nservant/HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python380182

• aidenlab/3d-dna

  3D de novo assembly (3D DNA) pipeline

  Language:Shell20056

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell409183

• tjiangHIT/cuteSV

  Long read based human genomic structural variation detection with cuteSV

  Language:Python24135

• nanoporetech/pod5-file-format

  Pod5: a high performance file format for nanopore reads.

  Language:C++12415

• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python15120

• nanoporetech/modkit

  A bioinformatics tool for working with modified bases

  Language:Rust1257

• d2l-ai/d2l-zh

  《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

  Language:Python60.8k10.8k

• epi2me-labs/wf-pore-c

  Language:Nextflow277

• massgravel/Microsoft-Activation-Scripts

  A Windows and Office activator using HWID / Ohook / KMS38 / Online KMS activation methods, with a focus on open-source code and fewer antivirus detections.

  Language:Batchfile92.4k9k

• refresh-bio/KMC

  Fast and frugal disk based k-mer counter

  Language:C++26172

• open2c/cooler

  A cool place to store your Hi-C

  Language:Python20052

• Tomas-M/iotop

  A top utility for IO

  Language:C36950

• xjtu-omics/HiCAT

  HiCAT new project

  Language:Python252

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++47259

• WarrenLab/minigraph-cactus-nf

  a nextflow pipeline for creating a pangenome with minigraph-cactus

  Language:Nextflow124

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python27627

• reflex-dev/reflex

  🕸️ Web apps in pure Python 🐍

  Language:Python18.9k1.1k

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C31517

• epi2me-labs/wf-single-cell

  Language:Python6833