markovmodel/pyemma_tutorials

Issues

• Coarse-grained reactive flux plots are inconsistent

  #87 opened 6 years ago
  2

• did we ever mention the usage of docstrings/documentation website?

  #86 opened 6 years ago
  1

• concatenating data

  #85 opened 6 years ago
  5

• include manuscript repo, once in a stable state as subtree

  #84 opened 6 years ago
  0

• idea: during testing convert notebooks to html and store them for later review.

  #81 opened 6 years ago
  2

• Tutorial refactoring

  #78 opened 6 years ago
  1

• Regular problems with MDShare timeouts

  #77 opened 6 years ago
  19

• notebook 7

  #76 opened 6 years ago
  2

• NB8

  #75 opened 6 years ago
  0

• NB 6 examples

  #74 opened 6 years ago
  1

• notebook 6 runtime

  #73 opened 6 years ago
  1

• AMMs?

  #72 opened 6 years ago
  3

• Notebook 6 'isin' bug

  #71 opened 6 years ago
  2

• physical units

  #70 opened 6 years ago
  3

• notebook 5 / hmm memberships

  #69 opened 6 years ago
  4

• notebooks 4, 5 etc.

  #68 opened 6 years ago
  2

• Notebook 5

  #67 opened 6 years ago
  0

• Notebook 4/5

  #66 opened 6 years ago
  1

• Exercises

  #65 opened 6 years ago
  2

• Notebook 3

  #64 opened 6 years ago
  1

• Notebook 2

  #62 opened 6 years ago
  0

• Notebook 2

  #61 opened 6 years ago
  1

• README install instructions

  #60 opened 6 years ago
  4

• conda install also fails

  #59 opened 6 years ago
  1

• conda environments

  #58 opened 6 years ago
  3

• install fails

  #57 opened 6 years ago
  2

• Add n_jobs=None to all Bayesian models' cktest() calls

  #56 opened 6 years ago
  2

• Use optimal parameters for pentapeptide

  #54 opened 6 years ago
  1

• One style for all notebooks

  #53 opened 6 years ago
  1

• Proper notebook headers

  #52 opened 6 years ago
  3

• ValueError when plotting first eigenvector

  #49 opened 6 years ago
  0

• License?

  #48 opened 6 years ago
  9

• Notebook speedup and stability

  #46 opened 6 years ago
  6

• demonstrate how to save models & pyemma.load()

  #45 opened 7 years ago
  1

• CI test on NB07 failed

  #41 opened 7 years ago
  2

• Update README

  #40 opened 6 years ago
  3

• Model-based observable distribution

  #39 opened 6 years ago
  0

• Models: maximum likelihood vs Bayesian

  #38 opened 7 years ago
  5

• Cosmetic changes to the notebooks

  #37 opened 6 years ago
  3

• help in selection number of cluster center and lag time

  #36 opened 7 years ago
  12

• Wrap up missing in notebook 6

  #33 opened 7 years ago
  2

• provide unit tests for notebooks

  #31 opened 6 years ago
  5

• packaging

  #29 opened 7 years ago
  0

• ipython kernel name / environment

  #24 opened 7 years ago
  4

• Error in Visualize_metstable() step

  #22 opened 7 years ago
  2

• Unconcatenated usage of pentapeptide data

  #17 opened 7 years ago
  1

• active_set not yet in use

  #16 opened 7 years ago
  2

• Fetching data for offline use

  #14 opened 6 years ago
  12

• How to compute experimental observables is not mentioned.

  #13 opened 7 years ago
  1

• nglview problems

  #12 opened 6 years ago
  6