markovmodel/pyemma_tutorials

Issues

• Error in plot_cktest Function，Maybe the version of Matplotlib Compatibility

  #202 opened 2 months ago by yuqingxiong96
  0

• chapman-kolmogorov test Error

  #196 opened 6 years ago by sundelinllnl
  2

• attribute error while fetching pdb

  #201 opened 10 months ago by nagarnoopur
  0

• Issues on MSM estimation and validation in Notebook 00

  #200 opened a year ago by Owen2015
  1

• Issue on clustering after changing the pip installation and trying conda installation

  #199 opened 3 years ago by andresilvapimentel
  2

• mlags meaning

  #197 opened 3 years ago by andresilvapimentel
  1

• save_trajs for multiple trajectories

  #198 opened 3 years ago by orthonalmatrix
  5

• Depending on precomputed models broke CI

  #90 opened 6 years ago by cwehmeyer
  2

• Error installing PyEMMA

  #195 opened 6 years ago by bamal
  2

• matplotlib rendering error

  #180 opened 6 years ago by marscher
  8

• util.contexts.settings not imported

  #194 opened 6 years ago by marscher
  0

• raw_latex directives can not be converted to mathjax

  #193 opened 6 years ago by marscher
  0

• missing https:// in the github repository link on first page?

  #189 opened 6 years ago by mrshirts
  3

• TODOs before ASAP version

  #186 opened 6 years ago by cwehmeyer
  2

• Specific changes to the manuscript

  #171 opened 6 years ago by cwehmeyer
  11

• Better connection between manuscript and the specific tutorial notebooks

  #170 opened 6 years ago by cwehmeyer
  3

• circleci is taking forever

  #177 opened 6 years ago by brookehus
  2

• re-build bibliography before resubmission

  #157 opened 6 years ago by thempel
  1

• Check figures and placement

  #161 opened 6 years ago by psolsson
  1

• Add basic MSM theory

  #136 opened 6 years ago by cwehmeyer
  4

• Add pre-rendered notebooks (gist)

  #167 opened 6 years ago by psolsson
  1

• More detailed workflow description

  #147 opened 6 years ago by cwehmeyer
  3

• Left vs right eigenvectors

  #145 opened 6 years ago by cwehmeyer
  2

• Hyperparameter choice: VAMP-2 lagtime

  #144 opened 6 years ago by cwehmeyer
  5

• Advanced methods section

  #154 opened 6 years ago by psolsson
  0

• Incomplete TICA usage description in NB 00

  #146 opened 6 years ago by cwehmeyer
  0

• Systematic hyperparameter space search vs the current sequential approach

  #148 opened 6 years ago by cwehmeyer
  0

• Conda package lacks static content

  #158 opened 6 years ago by cwehmeyer
  1

• Physical meaning of the TICA projection

  #139 opened 6 years ago by cwehmeyer
  1

• How to treat large/complex systems

  #138 opened 6 years ago by cwehmeyer
  5

• Example of a failed CK test

  #140 opened 6 years ago by cwehmeyer
  0

• Estimation/validation figure

  #142 opened 6 years ago by cwehmeyer
  3

• Store PDF version of paper in repo?

  #132 opened 6 years ago by davidlmobley
  1

• launcher not working

  #153 opened 6 years ago by cwehmeyer
  0

• question regarding dtrajs_concatenated

  #135 opened 6 years ago by gokulalgates
  6

• Validation scoring using shuffled subsamples

  #134 opened 6 years ago by hsidky
  1

• Better installation instructions

  #141 opened 6 years ago by cwehmeyer
  0

• Missing links/references and other minor changes

  #137 opened 6 years ago by cwehmeyer
  0

• Analysis and network figures

  #143 opened 6 years ago by cwehmeyer
  0

• Accompanying image

  #129 opened 6 years ago by cwehmeyer
  1

• Citations in notebooks

  #105 opened 6 years ago by marscher
  3

• more feedback on the tutorials

  #115 opened 6 years ago by brookehus
  5

• conda install & running produces error

  #110 opened 6 years ago by brookehus
  4

• Temporary skipping manuscript figure cells in notebook 00

  #118 opened 6 years ago by cwehmeyer
  0

• Seminar feedback

  #100 opened 6 years ago by cwehmeyer
  3

• mybinder

  #101 opened 6 years ago by cwehmeyer
  3

• NB00

  #94 opened 6 years ago by psolsson
  3

• Comments on the 00-showcase notebook

  #97 opened 6 years ago by cwehmeyer
  4

• [00] add_distances periodic boundaries

  #103 opened 6 years ago by thempel
  1

• README troubleshooting

  #96 opened 6 years ago by cwehmeyer
  1