Can't find cytof tutorial anymore
Closed this issue · 4 comments
Dear Authors,
I am trying to read the tutorial of CYTOF in Bioconductor. but it kept receiving the page was not found since yesterday. Not sure whether the tutorial was removed.
Kind Regards,
Synat,
Probably something to do with Bioc 3.18 having been released yesterday. I can see the workflow‘s landing page here, but it seems the html hadn‘t been built yet. Should fix itself over the next couple days, I hope.
In the meantime, the corresponding F1000Research article and/or CATALYST package vignette provide great resources that you could consult instead (same info, different format/lengths I‘d say).
I think this is related to a web server problem (where we retrieve some metadata) we are having, and I'm working on a fix, but it will indeed take a couple days to propagate to the latest release/devel versions.
In the meantime, you can access the bioC 3.17 version here:
https://bioconductor.org/packages/3.17/workflows/vignettes/cytofWorkflow/inst/doc/cytofWorkflow.html
There has been no code changes, so the same code should work on Bio 3.18 and devel. The needed metadata can be downloaded from here:
https://zenodo.org/records/10039274
OK, I've committed a fix to the RELEASE_3_18 branch .. hopefully it'll clear up in a couple of days.
Also to devel, tested it locally, will close the issue .. if I still get an error message, will re-open.