markrobinsonuzh/cytofWorkflow

Issues

• Cell populations in topTable() wrong

  #30 opened a year ago by LazDaria
  6

• how to generate heatmap of clusters x markers, but just for a subset of data

  #36 opened 8 months ago by CNicholasMDA
  2

• Can't find cytof tutorial anymore

  #33 opened 10 months ago by synatkeamsk
  4

• Data preparation

  #32 opened a year ago by synatkeamsk
  1

• FCS files with cluster labels

  #31 opened a year ago by juniajvs
  1

• heatmap color change

  #29 opened 2 years ago by haowBio
  2

• run pipeline with previously transformed data

  #28 opened 2 years ago by mflookp
  2

• Error: package or namespace load failed for ‘HDCytoData’

  #27 opened 2 years ago by rohitfarmer
  2

• Best pre-processing steps for flowSet data

  #25 opened 3 years ago by wudustan
  1

• Error in Isomap using plotDR

  #26 opened 3 years ago by LeleDR
  1

• cluster tree and dendrogram

  #24 opened 4 years ago by antoine4ucsd
  1

• Missing parameters

  #22 opened 4 years ago by 83years
  1

• plotClusterExprs memory and data extraction

  #23 opened 4 years ago by antoine4ucsd
  2

• Error in validObject(.Object)

  #21 opened 4 years ago by lingzili
  3

• differential_abundance_wrapper

  #20 opened 4 years ago by antoine4ucsd
  2

• usage of computeSpillmat

  #19 opened 4 years ago by calpiko
  1

• cofactor for arcsinh transformation when a sce object is assembled

  #18 opened 4 years ago by sunhuaiyu
  8

• facet_grid with scale_color_gradientn results in incorrect tSNE plots

  #16 opened 4 years ago by CNicholasMDA
  4

• Issue in the initial steps of data transformation and exploration

  #17 opened 4 years ago by sudu87
  7

• Misc

  #15 opened 4 years ago by SamGG
  1

• Order and labeling of clusters from most to least abundant

  #14 opened 4 years ago by CNicholasMDA
  1

• help implementing Phate

  #10 opened 5 years ago by 83years
  3

• Producing slightly different results

  #9 opened 5 years ago by algebio
  2

• Removed rows containing missing values (geom_point).

  #8 opened 5 years ago by jspegarova
  2

• Error in md_cols while creating sce

  #7 opened 5 years ago by Sa753
  1

• adding conditions (timepoint, treatment, clinical data) to analysis

  #6 opened 5 years ago by CNicholasMDA
  1