markrobinsonuzh

benchmarkR

Tools in R for benchmarking methods (generally on a genome-scale)

conquer

consistent quantification of external RNA-seq data sets

CrispRVariants

cytofWorkflow

DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

scRNA_pipelines_paper

scRNAseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning

markrobinsonuzh/conquer

consistent quantification of external RNA-seq data sets

markrobinsonuzh/scRNAseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

markrobinsonuzh/CrispRVariants

markrobinsonuzh/cytofWorkflow

markrobinsonuzh/TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

markrobinsonuzh/UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning

markrobinsonuzh/DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

markrobinsonuzh/scRNA_pipelines_paper

markrobinsonuzh/CrispRVariantsLite

Shiny App to accompany CrispRVariants package

markrobinsonuzh/sc_benchmark_metaanalysis

R scripts for the analysis of a bunch of single cell computational method benchmarks

markrobinsonuzh/os_monitor

markrobinsonuzh/bioconductor_docker

Docker Containers for Bioconductor - NEW!

markrobinsonuzh/Repitools

markrobinsonuzh/awesome_spatial_omics

tools and notes for spatial omics

markrobinsonuzh/biohackathon-projects-2023

Project code for BioHackathon Europe 2023.

markrobinsonuzh/CITEseq_pipeline

Templates for the analysis of CITE-seq data in the Robinson Lab

markrobinsonuzh/contributed-project-templates

A repository of community-developed project templates.

markrobinsonuzh/kids-python-fruehlingsferien2024

A collection of some Python scripts written by 3 boys aged 12-14

markrobinsonuzh/lrRNAseqVariantCalling

Codes for the Iso-Seq variant-calling paper

markrobinsonuzh/material

here is the general page for the course ..

markrobinsonuzh/omnibenchmark-py

Python module to run continuous benchmarks with omnibenchmark

markrobinsonuzh/rbm8a-rnaseq-explorer

Code and R objects to support the R/Shiny app for exploring rbm8a knockout RNA-seq experiments (Kocere et al.)

markrobinsonuzh/renkulab-docker

Source of docker images used for interactive sessions on Renkulab

markrobinsonuzh/rocker-versioned2

markrobinsonuzh/snsf-open-access-check

Code of SNSF Open Access Check

markrobinsonuzh/spatial-consensus-clustering

Repo of some code to explore consensus clustering on spatial omics data

markrobinsonuzh/spatialFDA

a package to compute spatial metrics and comparing them using functional data analysis

markrobinsonuzh/UZH-BIO390

Universität Zürich - “Introduction to Bioinformatics” Lecture Series

markrobinsonuzh/workshop-single-cell-transcriptomics-freiburg-25-Nov-2022

GitHub repository to collect all the materials for a workshop given by Mark D. Robinson at Uni. Freiburg 25.11.2022

markrobinsonuzh/wtc11-dtu-short-long