Pinned Repositories
benchmarkR
Tools in R for benchmarking methods (generally on a genome-scale)
conquer
consistent quantification of external RNA-seq data sets
CrispRVariants
cytofWorkflow
DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
diff_splice_paper
Code for differential splicing comparison paper (Soneson, Matthes, et al.)
scRNA_pipelines_paper
scRNAseq_clustering_comparison
A study to compare methods for clustering of scRNA-seq data
TreeSummarizedExperiment
An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning
UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning
markrobinsonuzh's Repositories
markrobinsonuzh/conquer
consistent quantification of external RNA-seq data sets
markrobinsonuzh/CrispRVariants
markrobinsonuzh/cytofWorkflow
markrobinsonuzh/UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning
UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning
markrobinsonuzh/DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
markrobinsonuzh/TreeSummarizedExperiment
An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
markrobinsonuzh/scRNA_pipelines_paper
markrobinsonuzh/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
markrobinsonuzh/CrispRVariantsLite
Shiny App to accompany CrispRVariants package
markrobinsonuzh/sc_benchmark_metaanalysis
R scripts for the analysis of a bunch of single cell computational method benchmarks
markrobinsonuzh/allele_specificity_paper
Analysis of allele-specific methylation (and changes in it)
markrobinsonuzh/os_monitor
markrobinsonuzh/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
markrobinsonuzh/bioconductor_docker
Docker Containers for Bioconductor - NEW!
markrobinsonuzh/Repitools
markrobinsonuzh/awesome_spatial_omics
tools and notes for spatial omics
markrobinsonuzh/biohackathon-projects-2023
Project code for BioHackathon Europe 2023.
markrobinsonuzh/CITEseq_pipeline
Templates for the analysis of CITE-seq data in the Robinson Lab
markrobinsonuzh/contributed-project-templates
A repository of community-developed project templates.
markrobinsonuzh/kids-python-fruehlingsferien2024
A collection of some Python scripts written by 3 boys aged 12-14
markrobinsonuzh/lrRNAseqVariantCalling
Codes for the Iso-Seq variant-calling paper
markrobinsonuzh/muscat-comparison
markrobinsonuzh/omnibenchmark-py
Python module to run continuous benchmarks with omnibenchmark
markrobinsonuzh/rbm8a-rnaseq-explorer
Code and R objects to support the R/Shiny app for exploring rbm8a knockout RNA-seq experiments (Kocere et al.)
markrobinsonuzh/renkulab-docker
Source of docker images used for interactive sessions on Renkulab
markrobinsonuzh/rocker-versioned2
markrobinsonuzh/snsf-open-access-check
Code of SNSF Open Access Check
markrobinsonuzh/UZH-BIO390
Universität Zürich - “Introduction to Bioinformatics” Lecture Series
markrobinsonuzh/workshop-single-cell-transcriptomics-freiburg-25-Nov-2022
GitHub repository to collect all the materials for a workshop given by Mark D. Robinson at Uni. Freiburg 25.11.2022
markrobinsonuzh/wtc11-dtu-short-long