markrobinsonuzh/TreeSummarizedExperiment

Issues

• Method to merge TreeSE objects?

  #82 opened 3 years ago by antagomir
  2

• Coercion from phyloseq to TreeSummarizedExperiment

  #85 opened a year ago by hpages
  2

• About rarefaction

  #84 opened a year ago by john123lol
  0

• subsetByLeaf(tse) mixes up the rowTree tips and rownames of the new object

  #83 opened a year ago by Begia
  0

• Node information is not stored in rowLinks and subsetting problem

  #81 opened 3 years ago by dktanwar
  1

• add subsetByLeaf

  #79 opened 3 years ago by fionarhuang
  0

• toTree function causing an error when the levels dont follow an ascending order of the group types

  #77 opened 3 years ago by NPSDC
  8

• Feature request: toTree with na.rm

  #40 opened 3 years ago by FelixErnst
  5

• setting rowTree throws error if some rows are dropped

  #74 opened 4 years ago by FelixErnst
  2

• Can't install TSE successfully

  #72 opened 4 years ago by fionarhuang
  1

• To do list

  #42 opened 4 years ago by fionarhuang
  1

• Subsetting an object with duplicated rownames

  #68 opened 4 years ago by FelixErnst
  4

• bug: subsetting doesn't work anymore with saved objects

  #62 opened 4 years ago by FelixErnst
  6

• feature: Adding a slot for information relating to rowData/FeatureIDs in addition to taxonomy

  #59 opened 4 years ago by microsud
  10

• add rowTree & colTree as setters

  #52 opened 4 years ago by fionarhuang
  0

• rbind, cbind

  #49 opened 4 years ago by fionarhuang
  0

• test slack

  #48 opened 4 years ago by fionarhuang
  1

• test slack

  #47 opened 4 years ago by fionarhuang
  0

• node.label issue

  #44 opened 4 years ago by antagomir
  2

• Travis CI (error)

  #39 opened 4 years ago by fionarhuang
  1

• issue with sparse matrices

  #10 opened 4 years ago by jkanche
  2

• Tree inside TreeSummarizedExperiment is not subset

  #34 opened 4 years ago by FelixErnst
  4

• Subsetting by rownames is not available

  #30 opened 4 years ago by FelixErnst
  6

• typo in package name

  #19 opened 5 years ago by jkanche
  0

• add unit tests

  #6 opened 6 years ago by fionarhuang
  0

• TaxonomyTable?

  #2 opened 6 years ago by lwaldron
  3

• the message argument not really working

  #7 opened 6 years ago by fionarhuang
  1

• Bioconductor classes should be CamelCase

  #1 opened 6 years ago by lwaldron
  1