markrobinsonuzh

benchmarkR

Tools in R for benchmarking methods (generally on a genome-scale)

conquer

consistent quantification of external RNA-seq data sets

CrispRVariants

cytofWorkflow

DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

scRNA_pipelines_paper

scRNAseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning

markrobinsonuzh/diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

markrobinsonuzh/benchmarkR

Tools in R for benchmarking methods (generally on a genome-scale)

markrobinsonuzh/CrispRvariants_manuscript

markrobinsonuzh/awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

markrobinsonuzh/allele_specificity_paper

Analysis of allele-specific methylation (and changes in it)

markrobinsonuzh/treeAGG

R package for inferring aggregation up a tree

markrobinsonuzh/2016-07-18-zurich

markrobinsonuzh/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

markrobinsonuzh/BioC2019-workshop_multi-scRNA-seq

markrobinsonuzh/compgen_rnaseq_2016

markrobinsonuzh/samanta_cytof_analysis_code

R code for cytof analysis in "Novel pro-inflammatory AGM-associated macrophages are involved in embryonic development of hematopoietic stem cells"

markrobinsonuzh/2016-01-13-training-prep

markrobinsonuzh/2019-07-01-zurich-ELIXIR-SIB

https://markrobinsonuzh.github.io/2019-07-01-zurich-ELIXIR-SIB

markrobinsonuzh/AnnRevBiomedDataScience_RNAseq

markrobinsonuzh/BiocAdvanced

Advanced R / Bioconductor training material

markrobinsonuzh/compareSingleCell

Workflows for comparative analyses of single-cell RNA sequencing data.

markrobinsonuzh/compbiozurich.github.io

A resource of the Zurich bioinformatics and computational biology community

markrobinsonuzh/differential_state_examples

markrobinsonuzh/fda

Read-only mirror of "fda" from r-forge SVN.

markrobinsonuzh/foobar

markrobinsonuzh/hw1

markrobinsonuzh/iCount

iCount, protein-RNA interaction analytics

markrobinsonuzh/iSEE2018

Code and manuscript files for the iSEE paper

markrobinsonuzh/pretoria_rnaseq_course_feb2019

markrobinsonuzh/R-ecology

Data Carpentry R lessons on ecology

markrobinsonuzh/regsplice

regsplice: R package for detection of differential exon usage in RNA-seq and exon microarray data

markrobinsonuzh/robinsonlabuzh.github.io

Robinson Lab website

markrobinsonuzh/rubenstein_cytof_analysis

Analysis of CyTOF data for Rubenstein manuscript

markrobinsonuzh/TreeSE

R/Bioconductor package to manage hierarchies in genomic datasets. eg., single cell and microbiome datasets

markrobinsonuzh/zunderlab.github.io

Zunder Lab website