Error in md_cols while creating sce
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Dear sir,
I am always getting that error message and can't get beyond that stage.
I ensured installing the recent version of R and CATALYST as you previously advised. Also, I am following the recent version published on 17th of Dec 2019. but the issue unfortunately is not resolved and I can't get beyond that stage
sce <- prepData(fs, panel, md, features = panel$fcs_colname)
Error in prepData(fs, panel, md, features = panel$fcs_colname) :
all(ids %in% md[[md_cols$file]]) is not TRUE
I also did ensure that the md$file_names are the same as in the flowset.
Please advise
Thanks
Samar
Can you give the output of sessionInfo()
after loading the CATALYST
package? As I write this, 1.10.1 is the latest version.
Also the outputs of md
and flowCore::keyword(fs, "FILENAME")
could be informative.
Best, Mark