marta-vidalgarcia

20191130_ANU

3D_GM_misc

Miscellaneous scripts to deal with 3D landmark data and rendered volumes

jumping-toads

This repository contains the R code for the paper: Hudson CM, Vidal-García M, Murray TG, Shine R. 2020 The accelerating anuran: evolution of locomotor performance in cane toads ( Rhinella marina, Bufonidae) at an invasion front. Proc. R. Soc. B 20201964. http://dx.doi.org/10.1098/rspb.2020.1964

mantis-evol

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

mesh_process

An R tool for batch-processing of meshes and landmark files for shape analyses

morpho.tools.GM

A set of functions to help with geometric morphometric analyses of 3D data

Oculudentavis_retrodeformation

Retrodeformation code for the paper Bolet, A., Stanley, E., Daza, J.D., Arias, J.S., Čerňanský, A., Vidal-García, M., Bauer, A.M., Bevitt, J.J., Peretti, A., Evans, S.E., (2021) Unusual morphology in the mid-Cretaceous lizard Oculudentavis. Current Biology. https://bit.ly/3eaZcVL

ShapeRotator

an R tool for standardised rigid rotations of articulated Three-Dimensional structures with application for geometric morphometrics

symmetry

This R Tool Detects Object Symmetry And Plots Estimated Paired Landmarks

tanggle

phylogenetic networks using ggplot2 and ggtree

marta-vidalgarcia/ShapeRotator

an R tool for standardised rigid rotations of articulated Three-Dimensional structures with application for geometric morphometrics

marta-vidalgarcia/morpho.tools.GM

A set of functions to help with geometric morphometric analyses of 3D data

marta-vidalgarcia/mesh_process

An R tool for batch-processing of meshes and landmark files for shape analyses

marta-vidalgarcia/tanggle

phylogenetic networks using ggplot2 and ggtree

marta-vidalgarcia/3D_GM_misc

Miscellaneous scripts to deal with 3D landmark data and rendered volumes

marta-vidalgarcia/jumping-toads

This repository contains the R code for the paper: Hudson CM, Vidal-García M, Murray TG, Shine R. 2020 The accelerating anuran: evolution of locomotor performance in cane toads ( Rhinella marina, Bufonidae) at an invasion front. Proc. R. Soc. B 20201964. http://dx.doi.org/10.1098/rspb.2020.1964

marta-vidalgarcia/symmetry

This R Tool Detects Object Symmetry And Plots Estimated Paired Landmarks

marta-vidalgarcia/20191130_ANU

marta-vidalgarcia/mantis-evol

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

marta-vidalgarcia/Oculudentavis_retrodeformation

Retrodeformation code for the paper Bolet, A., Stanley, E., Daza, J.D., Arias, J.S., Čerňanský, A., Vidal-García, M., Bauer, A.M., Bevitt, J.J., Peretti, A., Evans, S.E., (2021) Unusual morphology in the mid-Cretaceous lizard Oculudentavis. Current Biology. https://bit.ly/3eaZcVL

marta-vidalgarcia/2019OrganizationalDocs

notes and documents for 2019 Workshop

marta-vidalgarcia/2019Workshop

Files related to 2019 workshop

marta-vidalgarcia/BH_exercise2-1

marta-vidalgarcia/BHlab_exercise1

A short exercise to clone this repo and modify the file locally

marta-vidalgarcia/CAPE

marta-vidalgarcia/DeepLearningBasedSegmentationForBiologists

3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images

marta-vidalgarcia/drishti

Drishti

marta-vidalgarcia/EMMLiv2

marta-vidalgarcia/ggnetworx

phylogenetic networks using ggplot2 and ggtree

marta-vidalgarcia/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

marta-vidalgarcia/landmark-free-deformetrica

marta-vidalgarcia/Landmarking

Repository for registration-based landmarking and shape optimization.

marta-vidalgarcia/phangorn

Phylogenetic analysis in R

marta-vidalgarcia/practical-machine-learning-with-python

Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.

marta-vidalgarcia/Python_Intro_ANU

python notebooks and example data for bioinformatics-bash-python course run for RSB at ANU

marta-vidalgarcia/r-raster-vector-geospatial

Data Carpentry: Introduction to Geospatial Raster and Vector Data with R

marta-vidalgarcia/raukr

Jenny Bryan's instruction at RaukR: Advanced R for Bioinformatics Summer School

marta-vidalgarcia/Ubuntu-Rstudio-server-setup

Here's a bash script that'll get Rstudio server (preview 1.3) setup with Microsoft open R 3.5 under the hood.

marta-vidalgarcia/VoxelStats

A MATLAB package for multi-modal voxel-wise brain image analysis

marta-vidalgarcia/VTK

Mirror of Visualization Toolkit repository