martin-steinegger

academic-kickstart

af-protein-universe

classrepo

fann-opencl

opencl powerd Fast Artificial Neural Network Library (FANN)

fold_tree

snakemake pipeline for creating trees from sequence sets

gor

Java implementation of GOR I,III,IV,V secondary structure prediction

kraken-protocol

Metagenome analysis using the Kraken software suite

plass-analysis

Benchmark for PLASS paper

reprof

secondary structure prediction

setcover

linear (time,space) greedy set cover implementation

martin-steinegger/kraken-protocol

Metagenome analysis using the Kraken software suite

martin-steinegger/setcover

linear (time,space) greedy set cover implementation

martin-steinegger/plass-analysis

Benchmark for PLASS paper

martin-steinegger/academic-kickstart

martin-steinegger/fold_tree

snakemake pipeline for creating trees from sequence sets

martin-steinegger/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

martin-steinegger/af-protein-universe

martin-steinegger/classrepo

martin-steinegger/ColabFold

Making Protein folding accessible to all via Google Colab!

martin-steinegger/FAMSA

Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM)

martin-steinegger/ProstT5-llama

martin-steinegger/bash

martin-steinegger/bioconda-recipes

Conda recipes for the bioconda channel.

martin-steinegger/Complete-Striped-Smith-Waterman-Library

martin-steinegger/EnzymeDesign

martin-steinegger/FLASH

FLASH (Fast Length Adjustment of SHort reads)

martin-steinegger/foldcomp

Compressing protein structures effectively with torsion angles

martin-steinegger/hit-counter

Easily Count Hits 📈 on a Website by Requesting a SVG Displaying Hit Count 🎯

martin-steinegger/kraken2

The second version of the Kraken taxonomic sequence classification system

martin-steinegger/KrakenTools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

martin-steinegger/MMseqs2-App

MMseqs2 app to run on your workstation or servers

martin-steinegger/parasail

Pairwise Sequence Alignment Library

martin-steinegger/personal_website

martin-steinegger/phaser

phasing and Allele Specific Expression from RNA-seq

martin-steinegger/responsiblereview

martin-steinegger/rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

martin-steinegger/RoseTTAFold2

martin-steinegger/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

martin-steinegger/swdiag

Simple aligner

martin-steinegger/tmalign-wasm