martinschatz-cz
BioImage Analyst
UCT Prague, VMCF - Science Faculty of Charles University, Natinal Technical Library in PraguePrague, Czech republic
Pinned Repositories
bia-overview
Jupyter-book repo for overview of my fav. sources and tools for BiA
binder-demo1
Simple tutorial example of binder enabled demo with trivial calcuation
example_pytest
genotoxicity-bia
ImageJ_Pneumonia_Estimation_Tool
ImageJ tool for estimation of pneumonia in CT images (of lungs)
pyimagej-julab
Playground for testing PyImageJ with Jupyetr Lab
SciAugment
SciAugment aims to provide tools for image augmentation based on machine on which images were taken.
SciCount
SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datasets.
testovaci
test repo
the-segmentation-game
Gamified image segmentation quality estimation
martinschatz-cz's Repositories
martinschatz-cz/binder_pandas_stat
martinschatz-cz/SemiS_YOLO_training
Semi-supervised YOLOv5 Training files for tutorial
martinschatz-cz/FSUK_workshop21
Image analysis and data processing in superresolution microscopy workshop 2021, Faculty of Science, Charles University
martinschatz-cz/Cellpose-Fiji
ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
martinschatz-cz/clearml
ClearML - Auto-Magical CI/CD to streamline your ML workflow. Experiment Manager, MLOps and Data-Management
martinschatz-cz/Content-Analysis
Simple Content Analysis with R Shiny
martinschatz-cz/Content-Analysis-2020
Jupyter Notebooks to follow for each week
martinschatz-cz/empty
martinschatz-cz/fiji-macros
martinschatz-cz/gemos
martinschatz-cz/jupyterlab-git
An example Docker container with jupyterlab-git
martinschatz-cz/markdown-guide
The Markdown Guide for the Perplexed
martinschatz-cz/mediacommtools
Tools/resources for journalism, media, communication, computational social science
martinschatz-cz/medium
Python codes for the Medium articles I write
martinschatz-cz/neubias_academy_stardist
martinschatz-cz/pyopenxr_examples
Sample programs using the pyopenxr python AR/VR bindings
martinschatz-cz/stardist
StarDist - Object Detection with Star-convex Shapes
martinschatz-cz/surfcut-matlab
MatLab version of https://github.com/adamltyson/surfcut-python surfcut python version. Originally repository for FIJI surfcut : https://github.com/sverger/SurfCut
martinschatz-cz/surfcut-python
Python port of surfcut