Pinned Repositories
IMP_BioSystem_Domain_Fly_Genome
Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
METALoci
METALoci: spatially auto-correlated signals in 3D genomes
Sox9_METALoci
Code example of METALoci applied to H3K27ac for the Sox9 mouse locus during development (E13.5)
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
TADkit
3D Genome Browser
3DAROC21
3DAROC21 - 3C-based data analysis and 3D reconstruction of chromatin folding (2020)
esda
statistics and classes for exploratory spatial data analysis
esda
statistics and classes for exploratory spatial data analysis
martirenom's Repositories
martirenom/esda
statistics and classes for exploratory spatial data analysis