3DGenomes/TADbit

Issues

• Adding support for Spacewalk files in tadbit model

  #393 opened 4 months ago by iagomaceda
  1

• TAD calling weird behaviour

  #392 opened 5 months ago by iagooteroc
  0

• Restriction with Arima kit

  #391 opened 6 months ago by jeff-godwin
  10

• Error of TADbit clean

  #389 opened a year ago by iagomaceda
  3

• Tadbit Parse Error

  #345 opened 4 years ago by eng3001
  7

• gem error

  #336 opened 4 years ago by shiyi-pan
  5

• Error during parse_sam()

  #387 opened 2 years ago by dnygard
  0

• Export to .hic error

  #386 opened 2 years ago by manuelfmerino
  0

• tadbit map getting stuck

  #385 opened 2 years ago by leomorelli
  3

• loop_model.json file required to run loopbit

  #384 opened 2 years ago by AAli-90
  0

• Error loading mcool file

  #383 opened 2 years ago by ericmalekos
  0

• Error in tadbit parse

  #382 opened 2 years ago by iwbaek0828
  0

• TADbit bin not generating a symmetric matrix

  #377 opened 2 years ago by pollicipes
  3

• Raw matrix from TADbit API and TADbit tools are different.

  #379 opened 2 years ago by pollicipes
  2

• Mapping problem tutorial

  #373 opened 3 years ago by manuelfmerino
  2

• Matrix is too sparse after mapping

  #374 opened 3 years ago by manuelfmerino
  2

• Problem with building from Dockerfile

  #372 opened 3 years ago by yann-zhong
  1

• Tests fail

  #371 opened 3 years ago by rekado
  1

• Problem while modelling

  #370 opened 3 years ago by AngieD9110
  3

• Parsing bam during ICE normalization

  #365 opened 3 years ago by vntasis
  0

• oneD normalization

  #366 opened 3 years ago by alkurowska
  3

• HIC matrix in .mat format

  #363 opened 3 years ago by alkurowska
  1

• any way from bowtie2 aligned bam file or filtered pairs file to the tadbit compatible bam file?

  #295 opened 5 years ago by brainfo
  5

• TADbit export error

  #364 opened 3 years ago by alkurowska
  1

• Problem with the weight values in cooler output

  #359 opened 3 years ago by vntasis
  5

• Incompatible cooler format

  #358 opened 3 years ago by vntasis
  2

• Issue in tutorial with fastq-dump -DQ option

  #353 opened 3 years ago by ChristianKKelley
  1

• Unknown error with process

  #352 opened 3 years ago by poflawless
  1

• TADbit model: input matrix not generated by TADbit

  #350 opened 3 years ago by liezeltamon
  2

• gem-mappability

  #351 opened 3 years ago by alkurowska
  1

• pair-map using bowtie2 by --mapper failed

  #348 opened 3 years ago by hao-yanan
  1

• tadbit map ValueError

  #344 opened 4 years ago by eng3001
  9

• model problem

  #343 opened 4 years ago by Guoshuai1314
  9

• use TADbit on Capture Hi-C dataset

  #342 opened 4 years ago by jazberna1
  2

• abnormal eigenvectors

  #341 opened 4 years ago by shiyi-pan
  4

• valid read pairs is too few compared with other tools

  #340 opened 4 years ago by shiyi-pan
  4

• TADs numbers problem

  #339 opened 4 years ago by shiyi-pan
  1

• TADs calls problem

  #338 opened 4 years ago by shiyi-pan
  3

• gem tbz2 don't has the gem-mappability module

  #337 opened 4 years ago by shiyi-pan
  2

• Understanding write_interaction_pairs output

  #334 opened 4 years ago by Biojenifer
  0

• Bins to genomic coordinates

  #328 opened 4 years ago by aalvarezf
  2

• How to calculate the mapping rate?

  #325 opened 4 years ago by CaiCheng1996
  2

• How to get the coordinates of TAD

  #324 opened 4 years ago by CaiCheng1996
  1

• Keep only uniquely mapped reads pairs

  #321 opened 4 years ago by CaiCheng1996
  0

• How to save the output ?

  #322 opened 4 years ago by CaiCheng1996
  2

• Error in load chromosome

  #320 opened 4 years ago by lauradmartens
  2

• Error division by zero in find_compartments

  #318 opened 4 years ago by apaytuvi
  2

• Load .hic file for Compartments and TADs detection?

  #316 opened 5 years ago by awezmm
  2

• Index Error when running hic_data.find_compartments

  #317 opened 5 years ago by luciaalvarez95
  1

• problem with installation

  #289 opened 5 years ago by DonStephano
  1