marwan-abdellah
Calligrapher, artist, biomedical engineer, scientific visualization expert and passionate with in silico neuroscience.
Blue Brain Project, EPFL Lausanne, Switzerland
Pinned Repositories
NeuroMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
Ultraliser
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
VessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
cufftShift
CUDA-based implementation for linear 1D, 2D and 3D FFT-Shift functions.
FFTW-OpenCV
Sample for integrating FFTW with OpenCV.
GPU-Computing-SDK-4.2.9
NVIDIA GPU Computing SDK 4.2.9. Fixing some stupid compilation bugs in the make files of the projects.
HWLOC
MATLAB-FVR
MATLAB-based implementation for the Fourier Volume Rendering Pipeline.
nvgpu-snmp
Query NVIDIA GPUs
volume-datasets
This repository contains a group of most common datasets used for volume rendering.
marwan-abdellah's Repositories
marwan-abdellah/dualmc
Simple C++ implementation of the (manifold) dual marching cubes algorithm from Gregory M. Nielson
marwan-abdellah/hidpy
A pythonic implementation to the HI-D technique preseneted by Shaban et al., 2020.
marwan-abdellah/BlenderSpike
A Blender add-on to bring animations from NEURON
marwan-abdellah/VessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing morphological skeletons of brain vasculature networks. https://portal.bluebrain.epfl.ch/
marwan-abdellah/academicons
An icon font for academics
marwan-abdellah/cgal
The public CGAL repository, see the README below
marwan-abdellah/cmake_example
Example pybind11 module built with a CMake-based build system
marwan-abdellah/Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
marwan-abdellah/DFCC
MATLAB files for the DFCC approach presented in Shaban et al (2018), Nucleic Acids Research
marwan-abdellah/eht-imaging
Imaging, analysis, and simulation software for radio interferometry
marwan-abdellah/example
marwan-abdellah/fenics-tutorial
Source files and published documents for the FEniCS tutorial.
marwan-abdellah/fmt
A modern formatting library
marwan-abdellah/GraduationProjectProposal-SBME
A template for graduation project proposal for the department of biomedical engineering, Cairo University.
marwan-abdellah/Hi-D
MATLAB files for the Hi-D approach presented in Shaban, H.; Barth, R.; Recoules, L.; Bystricky, K.; Hi-D: Nanoscale mapping of nuclear dynamics in single living cells. Genome Biology (2020). Released under the GNU General Public License.
marwan-abdellah/jremesh-tools
Blender addon for quad remeshing
marwan-abdellah/marwan-abdellah.com-assets
Assets for marwan-abdellah.com
marwan-abdellah/MB-Lab
MB-Lab is a character creation tool for Blender 2.80, based off of ManuelBastioniLAB
marwan-abdellah/NeuroM
Neuronal Morphology Analysis Tool
marwan-abdellah/neuromorpho
Making use of the REST API (NeuroMorpho.org v7) to query the database
marwan-abdellah/NeuroMorphoVis-1
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
marwan-abdellah/nmodl
Code Generation Framework For NEURON MODeling Language
marwan-abdellah/OMesh
OMesh is an adaptive mesh optimization library that is based on the GAMer.
marwan-abdellah/pybind-cmake
marwan-abdellah/pyoptflow
Optical Flow estimation in pure Python
marwan-abdellah/python-mesh-optimization
A scratch repository to code mesh optimization in python based on the GAMer library.
marwan-abdellah/quartet
A tetrahedral mesh generator that does isosurface stuffing with an acute tetrahedral tile.
marwan-abdellah/skeletor
3D skeleton extraction from meshes.
marwan-abdellah/Softwrap
Dynamics for retopology.
marwan-abdellah/terminals-are-sexy
💥 A curated list of Terminal frameworks, plugins & resources for CLI lovers.