Pinned Repositories
adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
avrotuples
Avro Scala helper classes: AvroTuple[1-22]
chipper
Fast proteasomal cleavage detection. Apache-licensed.
covid-19
A collection of work related to COVID-19
dockerfiles
Repo to hold my Docker files
notebooks
Repo to hold Jupyter notebooks
octave-nn
Octave code for Artificial Neural Networks
spark-parquet-example
Example project to show how to use Spark to read and write Avro/Parquet files
massie's Repositories
massie/octave-nn
Octave code for Artificial Neural Networks
massie/chipper
Fast proteasomal cleavage detection. Apache-licensed.
massie/notebooks
Repo to hold Jupyter notebooks
massie/avrotuples
Avro Scala helper classes: AvroTuple[1-22]
massie/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
massie/alternativefax
massie/avro-scala-compiler-plugin
Automatically exported from code.google.com/p/avro-scala-compiler-plugin
massie/nci_design
massie/covid-19
A collection of work related to COVID-19
massie/avocado
A Variant Caller, Distributed
massie/avro
Mirror of Apache Avro
massie/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
massie/bdg-services
Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.
massie/bdg-utils
General (non-omics) code used across BDG products. Apache 2 licensed.
massie/eggo
Ready-to-go Parquet-formatted public 'omics datasets
massie/GAParquet
Integrating ADAM/Parquet with GATK
massie/gastore
Sample code to inform a discussion around content-addressable storage
massie/gatk
GATK4 development
massie/gnocchi
massie/labs
Scripts for the PH525x: Data Analysis for Genomics
massie/massie.github.io
Public web site
massie/nn
Experimenting with neural networks
massie/OptiType
Precision HLA typing from next-generation sequencing data
massie/orthic
Orthic shorthand resources
massie/parquet-format
Mirror of Apache Parquet
massie/parquet-mr
Mirror of Apache Parquet
massie/schemas
massie/spark
Mirror of Apache Spark
massie/spark-parquet-shuffle
Code for reading/writing Spark shuffle as Parquet files
massie/ucdaviswineauction