massisnascimento

massisnascimento's Stars

• broadinstitute/CellBender

  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

  Language:Python28852

• calico/solo

  software to detect doublets

  Language:Python8413

• pachterlab/kallistobustools

  kallisto | bustools workflow for pre-processing single-cell RNA-seq data

  11530

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k505

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k253

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook42270

• erickdau/photo_ingest_proj

  Language:Python11

• hbc/knowledgebase

  recipes that save time

  Language:TeX12131

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R37554

• Gartner-Lab/deMULTIplex2

  deMULTIplex2: robust sample demultiplexing for scRNA-seq

  Language:R10

• gladstone-institutes/Bioinformatics-Workshops

  Workshops presented by the Gladstone Bioinformatics Core

  Language:HTML18263

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python27125

• Novartis/scar

  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

  Language:Python494

• chris-mcginnis-ucsf/DoubletFinder

  R package for detecting doublets in single-cell RNA sequencing data

  Language:R407108

• stardist/stardist

  StarDist - Object Detection with Star-convex Shapes

  Language:Python899219

• ncbi/sra-tools

  SRA Tools

  Language:C1.1k244

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.3k231

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python93374

• statgen/popscle

  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

  Language:C++4315

• cole-trapnell-lab/monocle3

  Language:R330100

• sidchop/neuRo-vis-BrainHack-2021

  Language:R247

• chris-mcginnis-ucsf/MULTI-seq

  R implementation of MULTI-seq sample classification workflow

  Language:R5910

• ChristophH/in-lineage

  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"

  Language:R245

• AlvarezBuyllaLab/SVZSingleCell

  Language:R2

• theislab/scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python412102

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k907