matnguyen

matnguyen's Stars

• treangenlab/magnet

  Language:Jupyter Notebook7

• mschatz/wga-essentials

  Docker image containing Whole Genome Assembly (WGA) essentials

  Language:Dockerfile32

• MAGICS-LAB/DNABERT_S

  DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

  Language:Python7818

• HazyResearch/hyena-dna

  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

  Language:Assembly61886

• MicrobeLab/DeepMicrobes-data

  Supporting data for the DeepMicrobes paper

  Language:R54

• HadrienG/InSilicoSeq

  :rocket: A sequencing simulator

  Language:Python19033

• CAMI-challenge/CAMISIM

  CAMISIM: Simulating metagenomes and microbial communities

  Language:Python18537

• ahmetbersoz/chatgpt-prompts-for-academic-writing

  This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.

  3.5k303

• randalburns/pcds.2024

  Living document that might/will become an e-book for Parallel Computing for Data Science

  Language:Jupyter Notebook1918

• schatzlab/appliedgenomics2023

  Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics

  Language:HTML275

• marbl/ModDotPlot

  Language:Python12410

• shmykelsa/AAAD

  Language:Java1.8k204

• ncbi/pgap

  NCBI Prokaryotic Genome Annotation Pipeline

  Language:Common Workflow Language32290

• RemiRigal/Plex-Auto-Languages

  Automated language selection for Plex TV Shows !

  Language:Python49818

• keylase/nvidia-patch

  This patch removes restriction on maximum number of simultaneous NVENC video encoding sessions imposed by Nvidia to consumer-grade GPUs.

  Language:Python3.6k288

• nf-core/fetchngs

  Pipeline to fetch metadata and raw FastQ files from public databases

  Language:Nextflow15475

• bhattlab/MGEfinder

  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

  Language:Python11416

• phac-nml/mob-suite

  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

  Language:Python12533

• WojtekTB/Chesscom-to-lichess-games

  This is a chrome AND firefox extension for one click import of chess.com games to lichess!

  Language:JavaScript459

• itzg/docker-minecraft-server

  Docker image that provides a Minecraft Server that will automatically download selected version at startup

  Language:Shell10.2k1.6k

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python137k27.4k

• rrwick/Bacsort

  a collection of scripts for organising bacterial genomes by species

  Language:Python769

• PoonLab/covizu

  Rapid analysis and visualization of coronavirus genome variation

  Language:JavaScript4620

• songweizhi/MetaCHIP

  Horizontal gene transfer (HGT) identification pipeline

  Language:Python5614

• qiyunlab/HGTector

  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

  Language:Python13135

• cidgoh/ontotrek

  A 3d ontology visualizer focusing on OBOFoundry.org ontologies

  Language:JavaScript6

• jacklul/pihole-updatelists

  Update Pi-hole's lists from remote sources easily

  Language:PHP1.5k84

• Cloudbox/Cloudbox

  Ansible-based solution for rapidly deploying a Docker containerized cloud media server.

  Language:Shell2.4k310

• awesome-selfhosted/awesome-selfhosted

  A list of Free Software network services and web applications which can be hosted on your own servers

  210k10k

• Wox-launcher/Wox

  A cross-platform launcher that simply works

  Language:Go24.7k2.4k