matthiaskoenig
Matthias König (PhD. in Biophysics) leads a junior research group for Systems Biology and Systems Medicine of the liver.
Humboldt UniversityBerlin
Pinned Repositories
brendapy
BRENDA parser in python
cy3sbml
cy3sbml: SBML for Cytoscape 3
dfba
Encoding Dynamic Flux Balance Analysis in SBML
exsimo
Executable simulation model of the liver
fbc_curation
FROG analysis in python for the reproducibility of FBC models
libsbgn-python
Python bindings for libsbgn
neo4sbml
Neo4j representation of SBML model components and annotations
pkdb
Pharmacokinetics database
sbmlsim
sbmlsim: SBML simulation made easy
sbmlutils
Python utilities for SBML
matthiaskoenig's Repositories
matthiaskoenig/sbmlutils
Python utilities for SBML
matthiaskoenig/pkdb
Pharmacokinetics database
matthiaskoenig/neo4sbml
Neo4j representation of SBML model components and annotations
matthiaskoenig/sbmlsim
sbmlsim: SBML simulation made easy
matthiaskoenig/pymetadata
Python utilities for working with metadata and COMBINE archives
matthiaskoenig/livermetabolism-site
König Lab Homepage
matthiaskoenig/pkdb_analysis
PKDB python library
matthiaskoenig/pancreas-model
matthiaskoenig/petabunit
Support for units and unit conversions in PEtab
matthiaskoenig/porous_media
python utilities for porous media analysis and visualization
matthiaskoenig/talinolol-model
Physiologically based pharmacokinetic (PBPK) model of talinolol.
matthiaskoenig/chlorzoxazone-model
matthiaskoenig/course-pharmacokinetic-modelling
matthiaskoenig/enalapril-model
Physiologically based pharmacokinetic (PBPK) model of enalapril
matthiaskoenig/etcher
Flash OS images to SD cards & USB drives, safely and easily.
matthiaskoenig/icg_webapp
Streamlit ICG webapp
matthiaskoenig/iri-model
Hepatocyte model of ischemia reperfusion injury (IRI)
matthiaskoenig/julia_rr
matthiaskoenig/labelstudio
Setup of label studio
matthiaskoenig/limax
LiMAx tools
matthiaskoenig/parameter-variability
Bayesian models for ODE models in the Systems Biology Markup Language (SBML)
matthiaskoenig/PEtab.jl
matthiaskoenig/pkpdbib
PK/PD bibliography and literature tools
matthiaskoenig/protein-distribution-app
Database of protein variability of CYP, UGT, ABC and SLC in human liver
matthiaskoenig/sbml-specifications
The specification documents for SBML.
matthiaskoenig/sorafenib-model
Sorafenib PBPK model
matthiaskoenig/spt-app
Web application for SPT results
matthiaskoenig/spt-model
SPT model
matthiaskoenig/valis
Virtual Alignment of pathoLogy Image Series
matthiaskoenig/zonation-image-analysis