matthiaskoenig
Matthias König (PhD. in Biophysics) leads a research group for Systems Medicine of the liver.
Humboldt UniversityBerlin
Pinned Repositories
brendapy
BRENDA parser in python
cy3sbml
cy3sbml: SBML for Cytoscape 3
dfba
Encoding Dynamic Flux Balance Analysis in SBML
exsimo
Executable simulation model of the liver
fbc_curation
FROG analysis in python for the reproducibility of FBC models
libsbgnpy
Python library for SBGN
neo4sbml
Neo4j representation of SBML model components and annotations
pkdb
Pharmacokinetics database
sbmlsim
sbmlsim: SBML simulation made easy
sbmlutils
Python utilities for SBML
matthiaskoenig's Repositories
matthiaskoenig/pkdb
Pharmacokinetics database
matthiaskoenig/sbmlutils
Python utilities for SBML
matthiaskoenig/cy3sbml
cy3sbml: SBML for Cytoscape 3
matthiaskoenig/libsbgnpy
Python library for SBGN
matthiaskoenig/pymetadata
Python utilities for working with metadata and COMBINE archives
matthiaskoenig/sbmlsim
sbmlsim: SBML simulation made easy
matthiaskoenig/itbtechtalks
Tech talks for the ITB
matthiaskoenig/livermetabolism-site
König Lab Homepage
matthiaskoenig/matthiaskoenig
matthiaskoenig/parameter-variability
Bayesian models for ODE models in the Systems Biology Markup Language (SBML)
matthiaskoenig/petabunit
Support for units and unit conversions in PEtab
matthiaskoenig/porous_media
python utilities for porous media analysis and visualization
matthiaskoenig/sbmlsim.jl
matthiaskoenig/icg_webapp
Streamlit ICG webapp
matthiaskoenig/limax
LiMAx tools
matthiaskoenig/pkpdbib
PK/PD bibliography and literature tools
matthiaskoenig/aliskiren-model
matthiaskoenig/canagliflozin-model
Physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) model of canagliflozin
matthiaskoenig/dapagliflozin-model
matthiaskoenig/fair-ca-visualization
Visualization of FAIR COMINE indicators
matthiaskoenig/glimepiride-model
Physiologically based pharmacokinetic (PBPK) model of glimepiride
matthiaskoenig/ImmuneDT.github.io
matthiaskoenig/labelstudio
Setup of label studio
matthiaskoenig/losartan-model
Physiologically based pharmacokinetics (PBPK) model of losartan
matthiaskoenig/protein-distribution-app
Database of protein variability of CYP, UGT, ABC and SLC in human liver
matthiaskoenig/rivaroxaban-model
Physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) model of rivaroxaban
matthiaskoenig/SBMLImporter.jl
Import dynamic models in the SBML format into a ReactionSystem for Gillespie, SDE and ODE simulations
matthiaskoenig/tirzepatide-model
Physiologically based pharmacokinetics (PBPK) model of tirzapetide
matthiaskoenig/vascular_trees.jl
matthiaskoenig/zonation-image-analysis