mattjmeier
My research is focused on the use of genomics technologies in the protection of human health.
Government of Canada
Pinned Repositories
runscanner-docker
A containerized version of Run Scanner for MISO-LIMS
2020_Desaulniers_hamster_RRBS
2020_DuplexSeq_Signatures
2020_PFAS_DEGs
A quick analysis to look at DEGs in each experimental group
ECCC
Work relating to genomics at Environment and Climate Change Canada
HC
Work relating to genetic toxicology analysis done at Health Canada
lacZ_COSMIC
shiny_dada2
Shiny app for dada2
R-ODAF_Health_Canada
Health Canada's version of the R-ODAF pipeline, which includes additional visualization and pipelining features
mattjmeier's Repositories
mattjmeier/lacZ_COSMIC
mattjmeier/ECCC
Work relating to genomics at Environment and Climate Change Canada
mattjmeier/HC
Work relating to genetic toxicology analysis done at Health Canada
mattjmeier/2020_Desaulniers_hamster_RRBS
mattjmeier/2020_DuplexSeq_Signatures
mattjmeier/2020_PFAS_DEGs
A quick analysis to look at DEGs in each experimental group
mattjmeier/shiny_dada2
Shiny app for dada2
mattjmeier/test_repo
Testing stuff
mattjmeier/2021_Buick_et_al_HepaRG_CometChip_TGx-DDI
mattjmeier/AgNP_mouse
mattjmeier/BMDExpress-2
Software for analyzing high dimensional dose-response data
mattjmeier/CLPP_shiny
Shiny app to perform some ecological analysis on Biolog plates (community-level physiologic profiling)
mattjmeier/CustomBMDExpressAnnotations
Code and examples for creating custom BMD Express annotations for "Defined category analysis" of GO Terms for non-model organisms
mattjmeier/D3-in-Rmd
How to get R and D3 to play nice in Rmd files
mattjmeier/general_purpose_scripts
Generally useful code; one liners, etc.
mattjmeier/mattjmeier.github.io
mattjmeier/MBCP
Analysis of microbial-based cleaning products
mattjmeier/Meier_et_al_AgNP_mouse_microbiome
Code and metadata to reproduce analysis for Meier et al., Low dose antibiotic ingestion potentiates systemic and microbiome changes induced by silver nanoparticles.
mattjmeier/Meier_et_al_Metatranscriptomics
Files and analysis to reproduce figures
mattjmeier/microfiltR
accessory functions for processing microbial community data
mattjmeier/MutilateR
mattjmeier/photoprism
AI-Powered Photos App for the Decentralized Web 🌈💎✨
mattjmeier/R-Intro
Introduction to R - first steps: expressions, functions and data
mattjmeier/R-ODAF
Omics Data Analysis Framework for Regulatory application
mattjmeier/R-ODAF_for_migration
mattjmeier/shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
mattjmeier/SigProfilerPlotting
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
mattjmeier/skywatch
A clone of Rolf Meier's astronomy page which has since been deprecated by Xplornet
mattjmeier/svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
mattjmeier/template-gabarit
Open source code repo template - Gabarit de dépôt de code source ouvert