maurya-anand
Bioinformatics Programmer with professional experience in the development of next-generation sequencing (NGS) tools, pipelines, databases, and web applications.
Oxford
Pinned Repositories
akm0001
ARA
ARA.v1.6.0
coursera.cicd.lab
Making Data Science Work for Clinical Reporting: CI/CD Lab
covid19live
getBamDepth
A script to report depth of coverage from BAM/SAM/CRAM file or parse the output generated from "samtools depth"
liftover
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
netflix-react
netflix clone app
nf-varcall
A Nextflow pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.
react-dictionary
maurya-anand's Repositories
maurya-anand/covid19live
maurya-anand/perl-utils
maurya-anand/wdl-qc
Fastq file QC and trimming using WDL
maurya-anand/annotate_my_genomes
A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
maurya-anand/BIGKnock
R package of performing biobank-scale gene-based association test via knockoffs.
maurya-anand/covidstats
Live tracking of Covid19 cases
maurya-anand/django_rest_frame
Django Rest Framework Course
maurya-anand/example-datasets
Datasets for programming practice problems @ practiceprobs.com
maurya-anand/gcp-for-bioinformatics
GCP for Bioinformatics Researchers
maurya-anand/genomics-in-the-cloud
Source code and related materials for the O'Reilly book
maurya-anand/hifi-amplicon-workflow
HiFi Amplicon Workflow
maurya-anand/igv-webapp
IGV Web App
maurya-anand/learn-wdl
Educational materials for learning WDL
maurya-anand/Linux-Bash-Commands
:godmode: Ultimate list of Linux bash commands, cheatsheet and resources
maurya-anand/miniwdl
Workflow Description Language developer tools & local runner
maurya-anand/nextflow-workshop-march-2023
Nextflow workshop materials March 2023
maurya-anand/nf-rmappet
Nextflow pipeline for performing parallel alternative splicing analysis using rMATS and Whippet and then overlapping the results.
maurya-anand/pb-human-wgs-workflow-wdl
maurya-anand/plotnine
A grammar of graphics for Python
maurya-anand/py-bokeh-notebooks
Interactive Web Plotting with Bokeh in IPython notebook
maurya-anand/r-bites
Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every week.
maurya-anand/release-tags
CLI tool to verify workflow reproducibility
maurya-anand/terra-docker
maurya-anand/terra-quick-start-wdl
A working space for developing a master vault of template notebooks for DSPs User Ed
maurya-anand/vcfR
Tools to work with variant call format files
maurya-anand/viral-pipelines
viral-ngs: complete pipelines
maurya-anand/wdl-cumulus-pipeline
Cloud-based scalable and efficient single-cell genomics workflows
maurya-anand/WDL-pipelines
WDL Analysis Research Pipelines
maurya-anand/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
maurya-anand/YouTransfer
The simple but elegant self-hosted file transfer & sharing solution