maweigert/biobeam

Update installation instructions or dependency information of installed packages?

haesleinhuepf opened this issue · 1 comments

haesleinhuepf commented

Hey Martin,

I had some issues getting biobeam running on my Fedora 27. I figured out that I need to run it on Python 3, install pyopencl, intel-opencl-drivers, numpy, scipy and pillow manually.
The scipy/pillow-issue is also discussed here: amueller/mglearn#2
Is there maybe something wrong with the dependency tree? Shouldn't all this (except intel-stuff) come directly with biobeam?

Cheers,
Robert

haesleinhuepf commented

Hey Martin,

we were just again having some issues installing BioBeam on MacOS.

Following things needed to be done/installed:

  • Install homebrew
  • Install Anaconda
  • brew install gcc
  • pip install msgpack

Maybe this info can be stored somewhere on the website?

Cheers,
Robert