maxbiostat
Biologist by training, statistician by trade.
School of Applied Mathematics (EMAp), Getúlio Vargas Foundation (FGV)Rio de Janeiro, Brazil
Pinned Repositories
BayesianStatisticsCourse
PhD-level course at [EMAp](https://emap.fgv.br/en)
Computational_Statistics
Course materials for Computational Statistics, PhD course at EMAp.
PhD_Thesis
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
presentations
Presentations I have given
R0_uncertainty
Some remarks on prior modelling for the basic reproductive number in the Susceptible-Infected-Recovered (SIR) epidemic model
StanConnect2021_Biostatistics
Repository for the Biomedical Statistics edition of StanConnect2021
Statistical_Inference_BSc
Course materials for Statistical Inference ("Inferência Estatística")
Statistical_Inference_MSc
Course materials for [Statistical Inference](https://emap.fgv.br/disciplina/inferencia-estatistica)
stats_modelling
Resources for Statistical Modelling ("Modelagem Estatística").
Student_projects
A collection of open research projects
maxbiostat's Repositories
maxbiostat/PhylogeographeR
CTMC-based phylogeography simulator
maxbiostat/BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
maxbiostat/bayesian_power_law
A Bayesian take on fitting power law (and alternatives) to data
maxbiostat/BEAST_GLM
maxbiostat/blue-beast
Automatically exported from code.google.com/p/blue-beast
maxbiostat/cciarm_2017
http://www.lac.inpe.br/cciarm/
maxbiostat/Colloquium_IMPA_2015
My presentation at the 30rd Brazilian Mathematics Colloquium at the National Pure and Applied Mathematics Institute (IMPA)
maxbiostat/DeepRoot
scripts for a simulation study in (bielejec et al 2014)
maxbiostat/diehl_ebola_cell_2016
supplementary code and data to Diehl et al, 2016 (Cell)
maxbiostat/doc
BEAST Documentation
maxbiostat/dppmixtures
R code prototypes for DPP gibbs sampler for mixtures of normals.
maxbiostat/FrechetTreeDistance
This repository contains all code and data for the manuscript "A Fréchet tree distance measure to compare phylogeographic spread paths across trees"
maxbiostat/LogFixer
LogFixer is a simple Python script that corrects BEAST output files with missing states or values.
maxbiostat/MEP_data
Data on measurably evolving populations (MEPs)
maxbiostat/modadclocks
maxbiostat/MultiBD
maxbiostat/NELSI
This is the repository for NELSI: Nucleotide Evolutionary rate Simulator
maxbiostat/networksKDD
Using complex networks for knwoledge discovey in (viral) sequence databases
maxbiostat/plbayes
Code and data from the paper Estimating the number of casualties in the American Indian war: a Bayesian analysis using the power law distribution
maxbiostat/poweRlaw
This package implements both the discrete and continuous maximum likelihood estimators for fitting the power-law distribution to data. Additionally, a goodness-of-fit based approach is used to estimate the lower cutoff for the scaling region.
maxbiostat/rspr
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
maxbiostat/RWTY
R We There Yet?
maxbiostat/santa-sim
A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
maxbiostat/second_year_poster
my second year poster for the Graduate School Poster Day 2016
maxbiostat/sprspace
A collection of shell, perl and R scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in posterior distributions from MCMC phylogenetic packages.
maxbiostat/stats_seminar_2017
my talk at the [Statistics seminar](http://www.maths.ed.ac.uk/school-of-mathematics/events/statistics) at the School of Mathematics, University of Edinburgh
maxbiostat/third_year_talk
My talk at the Institute of Evolutionary Biology Postgraduate Symposium 2017
maxbiostat/treespace
Explore spaces of phylogenetic trees