/pipelord3

A newerer and betterer pipelord version featuring wrappers

Primary LanguagePython

pipelord3

Installation

git clone https://github.com/maxlcummins/pipelord3.git
cd pipelord3
snakemake --use-conda

Usage

  1. Duplicate the yaml file at config/default.yaml and edit variables to your liking
  2. Edit workflow/Snakefile at line 7, changing configfile: "config/default.yaml" to instead include your new yaml file
  3. Run snakemake with the --use-conda flag

snakemake --use-conda