maxlcummins
Microbial genomicist at the University of Technology, Sydney
University of Technology, SydneySydney, Australia
Pinned Repositories
abricateR
abricate combinator
APEC-MGEN-2018
A repository providing data and scripts for a 2018 publication in Microbial Genomics
Bioinformatics
A repository aimed to orient the uninitiated!
chooklord
Scripts supporting antarctic lake manuscript in development
pipelord
A microbial genomic analysis pipeline used by the Djordjevic Lab
pipelord_old
A collection of Snakemake workflows used by the Djordjevic Genomics Lab
plasmidmapR
A package for the mass calculation and visualisation of reference plasmid coverage within whole genome sequence datasets
SG17-135
A repository containing scripts for the generation of figures within a publication on an XDR strain of Salmonella sourced from an Australian Gull
SGI1-REs
A Github repository containing supplementary methodology and materials for a manuscript
ST95
maxlcummins's Repositories
maxlcummins/pipelord
A microbial genomic analysis pipeline used by the Djordjevic Lab
maxlcummins/pipelord_old
A collection of Snakemake workflows used by the Djordjevic Genomics Lab
maxlcummins/Bioinformatics
A repository aimed to orient the uninitiated!
maxlcummins/chooklord
Scripts supporting antarctic lake manuscript in development
maxlcummins/Romanian-mcr-1-Escherichia-coli
A repository detailing the whole genome sequence analysis of a collection of Escherichia coli from Romania
maxlcummins/SG17-135
A repository containing scripts for the generation of figures within a publication on an XDR strain of Salmonella sourced from an Australian Gull
maxlcummins/SGI1-REs
A Github repository containing supplementary methodology and materials for a manuscript
maxlcummins/ST95
maxlcummins/abricateR
abricate combinator
maxlcummins/plasmidmapR
A package for the mass calculation and visualisation of reference plasmid coverage within whole genome sequence datasets
maxlcummins/APG-OHEC-Retro-M1
A repository containing supplementary scripts for data processing and visualisation in Watt and Cummins et al, 2024
maxlcummins/APG-OHEC-Retro-M2
maxlcummins/AVC171
A repository for a manuscript about an Australian APEC carrying a hybrid virulence resistance plasmid
maxlcummins/Bacsort
a collection of scripts for organising bacterial genomes by species
maxlcummins/BLASTlord
A script facilitating filtering of BLAST data
maxlcummins/BLASTlord-snek
These lords were made for BLASTn, 'n' that's just what they'll do!
maxlcummins/bonechook
A repository supporting a manuscript on Australian APEC
maxlcummins/Citrobacter
A repository containing analysis and associated scripts for a manuscript on a collection of Citrobacter
maxlcummins/custom_DBs
Extra databases for aribalord snakemake pipeline
maxlcummins/datasciencecoursera
maxlcummins/datasharing
The Leek group guide to data sharing
maxlcummins/enterolordDB
A database with manually curated metadata, phylogenetic data generated by enterobase and genotypic data for public and custom databases generated using abricate
maxlcummins/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
maxlcummins/Getting-and-Cleaning-Data
Final project for Getting and Cleaning Data course
maxlcummins/Pangenomelord
A snakemake pipeline for running Prokka and Roary
maxlcummins/Pelegri_et_al_2023
A repository containing supplementary scripts for data processing and visualisation in Pelegri et al, 2023
maxlcummins/pipelord2_0
maxlcummins/pipelord3
A newerer and betterer pipelord version featuring wrappers
maxlcummins/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
maxlcummins/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see