maxozo

Agracan_Length_Volume_AFM

Android_app2

the app forcosmetics

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

bubble_plots

cellxgene_vip_module

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Chord_Graphs

Code snippet used for the chord graph automated production

coloc

PLF

Peptide location fingerprinting (PLF) is a technique capable of identifying modified proteins and potential causal mechanisms in complex biological samples. Protein Locational Fingerprinter determines statisticaly significant peptide yields from protein functional domains.

Protease_Proteome

This repo contains codes used for the protease proteome, to generate the search strings that were used to conduct a systematic literature review.

maxozo/PLF

Peptide location fingerprinting (PLF) is a technique capable of identifying modified proteins and potential causal mechanisms in complex biological samples. Protein Locational Fingerprinter determines statisticaly significant peptide yields from protein functional domains.

maxozo/Protease_Proteome

This repo contains codes used for the protease proteome, to generate the search strings that were used to conduct a systematic literature review.

maxozo/Agracan_Length_Volume_AFM

maxozo/atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

maxozo/bubble_plots

maxozo/cellxgene_vip_module

maxozo/chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

maxozo/Chord_Graphs

Code snippet used for the chord graph automated production

maxozo/coloc

maxozo/configs

Config files used to define parameters specific to compute environments at different Institutions

maxozo/copy_files

maxozo/eqtl

maxozo/gt_check

Very simple module to check two genotype sample identities.

maxozo/h5ad_to_seurat

this is a set of scripts to convert g5ad file to a seurat 5 object

maxozo/hadge

Comprehensive pipeline for donor demultiplexing in single cell

maxozo/Matrikine_Discovery

This Repository contains codes that are used for Matrikine Discovery manuscript

maxozo/maxozo

maxozo/maxozo.github.io

maxozo/modules

maxozo/multifiles_to_PDFs

maxozo/MultiOme

Nextflow Pipeline for 10x MultiOme processing with optional measurement of heteroplasmy using mgatk

maxozo/nf_example_template

maxozo/nf_irods_to_lustre

Fetch Cram files and/or Cellranger data from Sanger Irods to /lustre

maxozo/qstar

maxozo/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

maxozo/rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

maxozo/Small-usefull-LSF

maxozo/SSDV

maxozo/tensorqtl

Ultrafast GPU-enabled QTL mapper

maxozo/yascp

scRNA analysis pipeline