Wellcome Trust Sanger Institute - Human Genetics Informatics
Analysing genomic data at scale for the Human Genetics Program
Cambridge, UK
Pinned Repositories
docker-proxify
Allows building and running docker container images from behind a corporate proxy
gatk-cwl-generator
Generates CWL files from the GATK documentation
go-softpack-builder
Go implementation of a softpack builder service
hail_analysis_pipelines
Hail based analysis pipelines for HG projects
ibackup
Performant backups of many files to iRODS
nextflow-pipelines
Nextflow HGI pipelines
openconnect-proxy
Provide an authenticated http proxy that provides connectivity via an OpenConnect VPN client (to connect to a compatible AnyConnect VPN server)
softpack-core
SoftPack Core
softpack-web
Softpack Web provides a graphical user interface for Softpack services.
yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
Wellcome Trust Sanger Institute - Human Genetics Informatics's Repositories
wtsi-hgi/yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
wtsi-hgi/QTLight
eqtl analysis pipeline using tensorqtl
wtsi-hgi/coloc-flow
wtsi-hgi/cwl-graph-generate
Generates https://view.commonwl.org/ like workflows images, showing a complete workflow.
wtsi-hgi/mercuryrc
wtsi-hgi/spack-repo
Spack Package Repository
wtsi-hgi/wes-qc
Sample and variant QC for exome cohort studies
wtsi-hgi/go-softpack-builder
Go implementation of a softpack builder service
wtsi-hgi/ibackup
Performant backups of many files to iRODS
wtsi-hgi/r-spack-recipe-builder
Spack recipe creator for R packages in CRAN and Bioconductor used to build up the ubeR module for use in farm22
wtsi-hgi/softpack-builder
SoftPack Builder provides services for building SoftPack environments
wtsi-hgi/softpack-core
SoftPack Core
wtsi-hgi/softpack-web
Softpack Web provides a graphical user interface for Softpack services.
wtsi-hgi/uber-recipe-creator
wtsi-hgi/admixture-from-glimpse
Run admixture on GLIMPSE imputed genotypes to predict sample populations
wtsi-hgi/aeg-scrambler
AEG SCRAMBLEr
wtsi-hgi/bin2json
A simple C program to convert binary encode JSON into textual JSON
wtsi-hgi/conda-audited
Wrapper script to and audit and configure miniconda and micromamba
wtsi-hgi/farmers-report
Weekly report for farm usage
wtsi-hgi/glimpse-nextflow
wtsi-hgi/go-farmer
wtsi-hgi/MAVEQC
wtsi-hgi/nf_longread
nextflow pipeline for long read processing
wtsi-hgi/nf_tower_irods_to_lustre
wtsi-hgi/osdataproc
osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
wtsi-hgi/sarek
wtsi-hgi/softpack-docs
SoftPack Documentation
wtsi-hgi/spack-go
Basic Spack wrapper - in Go!
wtsi-hgi/spack-repo-testing
Spack Package Repository (static version for tests)
wtsi-hgi/wtsi-hgi.github.io
Github webpage for HGI projects