Wellcome Trust Sanger Institute - Human Genetics Informatics
Analysing genomic data at scale for the Human Genetics Program
Cambridge, UK
Pinned Repositories
docker-proxify
Allows building and running docker container images from behind a corporate proxy
gatk-cwl-generator
Generates CWL files from the GATK documentation
go-softpack-builder
Go implementation of a softpack builder service
hail_analysis_pipelines
Hail based analysis pipelines for HG projects
ibackup
Performant backups of many files to iRODS
nextflow-pipelines
Nextflow HGI pipelines
openconnect-proxy
Provide an authenticated http proxy that provides connectivity via an OpenConnect VPN client (to connect to a compatible AnyConnect VPN server)
softpack-core
SoftPack Core
softpack-web
Softpack Web provides a graphical user interface for Softpack services.
yascp
scRNA multimodal analysis pipeline utilised for large dataset processing
Wellcome Trust Sanger Institute - Human Genetics Informatics's Repositories
wtsi-hgi/consul-lock
CLI and Python interface for easily managing Consul locks
wtsi-hgi/nextflow-pipelines
Nextflow HGI pipelines
wtsi-hgi/single_cell_annotation
wtsi-hgi/metadata-check
Tests to perform on the iRODS metadata for a BAM file, versus the information in the file header
wtsi-hgi/nf_cellbender
Single cell Nextflow cellbender pipeline.
wtsi-hgi/docker-cookhla
wtsi-hgi/exomeQC-hail-gnomad
Code repository for sample and variant qc for Sanger cohorts using hail and gnomad qc code.
wtsi-hgi/hail_analysis_pipelines
Hail based analysis pipelines for HG projects
wtsi-hgi/indelible-docker
docker image instructions for Indelible
wtsi-hgi/nf_scrna_deconvolution
CellSNP-Vireo deconvolution pipeline, with optional genotype input.
wtsi-hgi/single_cell
Single Cell pipelines used at Sanger
wtsi-hgi/shepherd
Filesystem-agnostic distributed copy tool
wtsi-hgi/weaver
Browser-based Shiny frontend to view internal Lustre volume reports
wtsi-hgi/associations
This repository is for assotiations testing.
wtsi-hgi/cluster-launcher
A tool to bring up clusters launched via osdataproc. Repo found: https://github.com/wtsi-ssg/osdataproc
wtsi-hgi/crispr_container
wtsi-hgi/crook
wtsi-hgi/docker-hla-tapas
Dockerised HPA-TAPAS
wtsi-hgi/genestack-study-viewer
Easily view metadata from studies from genestack
wtsi-hgi/hail_jc_merge
hail scripts for merging cohorts
wtsi-hgi/HUVEC
wtsi-hgi/lustre-usage-db-transfer
For transferring lustre usage data from the old schema to the new one.
wtsi-hgi/nf_tensorqtl
single-cell eQTL mapping using tensorQTL (linear models)
wtsi-hgi/scrna_cellbender_container
wtsi-hgi/scrna_deconvolution_container
wtsi-hgi/secret-encrytion
wtsi-hgi/singularity-builder
Docker container and wrapper script that runs Singularity, mostly for building images
wtsi-hgi/svscore_container
wtsi-hgi/vault-prerun-reporter
A tool to give reports on what Vault will delete when we launch it on a project directory
wtsi-hgi/vault-shift-mtimes