mazzottidr
I am an Assistant Professor at the University of Kansas Medical Center interested in Biomedical Informatics applications to Sleep Medicine.
University of Kansas Medical CenterKansas City, KS
Pinned Repositories
1stSummerSchoolofBioinformatics
BMIN503_Final_Project
Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project
ccc_materials
Crash Course in Causality Materials
cursobioinfoUNIFESP
Material para o Curso de Bioinformática
cursoML2018
OSA_Symptom_Subtypes_LCA_Pipeline
This repository describes an end-to-end pipeline for using latent class analysis (LCA) for identification of subtypes of obstructive sleep apnea (OSA) based on specific symptom questions.
PennSleepReportExtraction
Scripts and strategies for extraction of sleep study report data at Penn Medicine Sleep Center
PRVM_868_2024_Materials
Code for the PRVM 868 Biomedical Informatics Driven Clinical Research
RNAseq_pipeline_NGS2013
SymptomSubtypes_HypnoLaus
Code for identifying OSA Symptom Subtypes in HypnoLaus
mazzottidr's Repositories
mazzottidr/RNAseq_pipeline_NGS2013
mazzottidr/app-flickrperson
PyBossa FlickrPerson Example App
mazzottidr/ArrayAnalysis
Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: - Procedures are often different between teams. - They are not always easy to access as they run through command lines. - It is often not clear what the meaning of the specific settings and results are - They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.
mazzottidr/assembly-exercise
Shotgun sequencing of text, in CGI script form
mazzottidr/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
mazzottidr/box-linux-sync
Linux client for Box.com
mazzottidr/coursera-android
Source Code for Android Course Example Applications
mazzottidr/CourseraGetAndCleaningData
Script and codebook for Get and Cleaning Data Coursera Course Project
mazzottidr/datasciencecoursera
mazzottidr/datasharing
The Leek group guide to data sharing
mazzottidr/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
mazzottidr/gitbook
Command line utility for generating books and exercises using GitHub/Git and Markdown
mazzottidr/human_exome_pipeline
human exome pipeline
mazzottidr/myfirstrepository
mazzottidr/ngs
Next Generation Sequencing Pipeline
mazzottidr/ngs-scripts
scripts!
mazzottidr/ngs13_diffexp_pipeline
Pipeline to map with TopHat2, compare annotation files with cuffcompare and do differential expression analysis
mazzottidr/ngsane
Analysis Framework for Biological Data from High Throughput Experiments
mazzottidr/oneliners
Useful bash one-liners for bioinformatics.
mazzottidr/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
mazzottidr/project-template
mazzottidr/pyblue
Micro static website generator for data reporting
mazzottidr/pybossa
Open-source crowd-sourcing (microtasking) platform with a focus on volunteer contribution and making it super-easy to create a crowd-sourcing app.
mazzottidr/qqman
R code for creating Manhattan plots and Q-Q plots for GWAS
mazzottidr/questions
mazzottidr/rDrop
Programmatic interface to Dropbox
mazzottidr/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
mazzottidr/rmarkdown-website-template
A template for R Markdown Website
mazzottidr/Roadmap
Scraper indexes the files listed in the TCGA's open access HTTP site as RDF
mazzottidr/selfspy
Log everything you do on the computer, for statistics, future reference and all-around fun!