mazzottidr
I am an Assistant Professor at the University of Kansas Medical Center interested in Biomedical Informatics applications to Sleep Medicine.
University of Kansas Medical CenterKansas City, KS
mazzottidr's Stars
oxford-cs-deepnlp-2017/lectures
Oxford Deep NLP 2017 course
cheat/cheat
cheat allows you to create and view interactive cheatsheets on the command-line. It was designed to help remind *nix system administrators of options for commands that they use frequently, but not frequently enough to remember.
gabrielecirulli/2048
The source code for 2048
snorkel-team/snorkel
A system for quickly generating training data with weak supervision
sferik/twitter-ruby
A Ruby interface to the Twitter API.
elabftw/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
jokergoo/circlize
Circular visualization in R
arq5x/bedtools2
bedtools - the swiss army knife for genome arithmetic
rstudio/flexdashboard
Easy interactive dashboards for R
benfulcher/hctsa
Highly comparative time-series analysis
kogakure/gitweb-theme
An alternative theme for gitweb, strongly inspired by GitHub
OxWearables/biobankAccelerometerAnalysis
Extracting meaningful health information from large accelerometer datasets
faridcher/ml-course
Starter code of Prof. Andrew Ng's machine learning MOOC in R statistical language
statgen/pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
stephenturner/qqman
An R package for creating Q-Q and manhattan plots from GWAS results
SMAPPNYU/smappR
R tools for analysis of Twitter data
garethjns/Kaggle-EEG
Seizure prediction from EEG data using machine learning. 3rd place solution for Kaggle/Uni Melbourne seizure prediction competition.
tpoisot/digitize
A R package to extract data from scatterplots
karthik/rDrop
Programmatic interface to Dropbox
jimhester/fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
stephenturner/twitterchive
Archive and analyze results from a Twitter search (**no longer maintained**)
maxconway/SNFtool
Similarity Network Fusion
ialbert/pyblue-central
Static website generator for sciencey people
trestletech/ShinyDash-Sample
Example shiny app built on the ShinyDash package.
nsrr/spout
Tested JSON Data Dictionaries. Turn your CSV data dictionary into a JSON repository. Collaborate with others to update the data dictionary in JSON format. Generate new Data Dictionary from the JSON repository. Test and validate your data dictionary using built-in tests, or add your own tests and validations.
UrbsLab/ExSTraCS_ML_Pipeline_Binary_Notebook
An rigorous, well documented machine learning analysis pipeline for binary classification datasets assembled as a Jupyter Notebook. Includes exploratory analysis, data processing, feature processing, ML modeling (9 algorithms, including the original ExSTraCS algorithm) with hyperparameter sweeps, visualizations, and statistical analysis. A comprehensive starting point to adapt to your own dataset an as an example of how to integrate a non-scikit-learn ML algorithm into a comparative pipeline.
UrbsLab/AutoMLPipe-BC
An automated, rigorous, and largely scikit-learn based machine learning analysis pipeline for binary classification. Adopts current best practices to avoid bias, optimize performance, ensure replicatability, capture complex associations (e.g. interactions and heterogeneity), and enhance interpretability. Includes (1) exploratory analysis, (2) data cleaning, (3) partitioning, (4) scaling, (5) imputation, (6) filter-based feature selection, (7) collective feature selection, (8) modeling with 'optuna' hyperparameter optimization across 13 implemented ML algorithms (including three rule-based machine learning algorithms: ExSTraCS, XCS, and eLCS), (9) testing evaluations with 16 classification metrics, model feature importance estimation, (10) automatically saves all results, models, and publication-ready plots (including proposed composite feature importance plots), (11) non-parametric statistical comparisons across ML algorithms and analyzed datasets, and (12) automatically generated PDF summary reports.
patilv/Popsenti
Assessing popularity of two entities on twitter
sachsmc/cosinor
R package for estimation and prediction of the cosinor model for periodic data