mbuttner
Senior Data Scientist at Calico (South San Francisco), previously Postdoc at DZNE (Bonn) and Helmholtz Munich (Munich)
@dzneBurlingame, California
Pinned Repositories
anndata-tutorials
Use cases for anndata.
diverse_R_stuff
This is a collection of functions I wanted to have in R, but did not find them.
kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
maren_codes
This is my personal collection of Python code chunks.
muon
muon is a multimodal omics Python framework
Palantir
Single cell trajectory detection
pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
python-gprofiler
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scanpy-tutorials
Scanpy Tutorials.
mbuttner's Repositories
mbuttner/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
mbuttner/diverse_R_stuff
This is a collection of functions I wanted to have in R, but did not find them.
mbuttner/anndata-tutorials
Use cases for anndata.
mbuttner/kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
mbuttner/maren_codes
This is my personal collection of Python code chunks.
mbuttner/muon
muon is a multimodal omics Python framework
mbuttner/Palantir
Single cell trajectory detection
mbuttner/pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
mbuttner/python-gprofiler
mbuttner/scanpy-tutorials
Scanpy Tutorials.
mbuttner/scverse.github.io
scverse.org website