mbuttner

mbuttner's Stars

• scverse/scanpy

  Single-cell analysis in Python. Scales to >100M cells.

  Language:Python2k491.8k610

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k45101470

• BlakeRMills/MetBrewer

  Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

  Language:R1.1k71984

• theislab/cellrank

  CellRank: dynamics from multi-view single-cell data

  Language:Python372973348

• theislab/scib

  Benchmarking analysis of data integration tools

  Language:Python3351318766

• theislab/kBET

  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

  Language:HTML16084323

• theislab/scCODA

  A Bayesian model for compositional single-cell data analysis

  Language:Jupyter Notebook15699324

• laminlabs/lamindb

  A data framework for biology.

  Language:Python139246313

• jdblischak/singleCellSeq

  Batch effects and the effective design of single-cell gene expression studies

  Language:R10011568

• scverse/pytometry

  Flow & mass cytometry analytics.

  Language:Python434298

• openproblems-bio/neurips-2023-scripts

  Scripts associated with the 2023 Open Problems competition

  Language:Jupyter Notebook10210

• theislab/gastrulation_analysis

  Language:Jupyter Notebook10421

• buettnerlab/pytometry_legacy

  This repository extends scanpy to handle flow and mass cytometry data.

  Language:Jupyter Notebook9211

• theislab/gut_lineage

  Language:Jupyter Notebook2303